RNA id: TU164408


Basic Information

Item Value
RNA id TU164408
length 312
lncRNA type sense_over
GC content 0.63
exon number 3
gene id AMCG00011579
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 165892 ~ 212562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGACGAGGGGTTCCGGGTTCGAGCCGAGAAACTGCTCAACATCTTCCAGAGCGACCTGTTCCAGGCCCTGCTGGatATCCAGGAGTTCTACgagctggctgtgtgtgagaCCCGCACCGCCGCTCGCCCGCAGACGCCAGTGCTGAAATACCGTTACCAAGATGAGGACACGCCCCCGATGGagcacagccccgcccacctgcccgGCCAGGTGAAGAGCCCCGAACTGGTTCACGTGTCGGAGAAGAACCTGTCGCAGCTGGAGGGAGTGCACGGCtacccctcacacacacacctgtcccCCATGAag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164344 lncRNA downstream 72624 96783 ~ 97829 (-) True G131152
TU164340 lncRNA downstream 105224 64893 ~ 65229 (-) True G131149
TU164296 lncRNA downstream 110356 53722 ~ 60097 (-) True G131114
TU164469 lncRNA upstream 147668 360230 ~ 360603 (-) True G131244
TU164759 lncRNA upstream 246948 459510 ~ 755699 (-) True G131425
TU164765 lncRNA upstream 248848 461410 ~ 462697 (-) True G131426
TU164778 lncRNA upstream 337477 550039 ~ 560333 (-) True G131428
TU164788 lncRNA upstream 414769 627331 ~ 630425 (-) True G131437
AMCG00011577 mRNA downstream 13057 145423 ~ 157396 (-) True AMCG00011577
AMCG00011578 mRNA downstream 31996 122359 ~ 138457 (-) True AMCG00011578
AMCG00011574 mRNA downstream 101670 65577 ~ 68783 (-) True AMCG00011574
AMCG00011573 mRNA downstream 106622 58725 ~ 63831 (-) True AMCG00011573
AMCG00011583 mRNA upstream 42319 254881 ~ 260591 (-) True AMCG00011583
AMCG00011582 mRNA upstream 49829 262391 ~ 268054 (-) True AMCG00011582
AMCG00011584 mRNA upstream 68369 280931 ~ 282141 (-) True AMCG00011584
AMCG00011589 mRNA upstream 80890 293452 ~ 303818 (-) True AMCG00011589
AMCG00011588 mRNA upstream 101457 314019 ~ 320628 (-) True AMCG00011588
TU164448 other upstream 90122 302684 ~ 303915 (-) False AMCG00011589
TU164750 other upstream 201955 414517 ~ 415154 (-) True G131420
TU164816 other upstream 452815 665377 ~ 667310 (-) False G131456
TU164834 other upstream 500586 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 577457 790019 ~ 796419 (-) False AMCG00011601

Expression Profile