RNA id: AMCG00011582


Basic Information

Item Value
RNA id AMCG00011582
length 768
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00011582
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 262391 ~ 268054 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGTCTTCTGTGCAGCGCCGCCTGTGCTCTGCTGCGCACTGCACTGCGTCTGCGCAGGCCGTGACGTCACACGCGGCCTCCCGTCTGCAGTCTATCCGGCAGAAACGTGTCGTGATCGCGGCTGAAACGCGCTCCCCGCAGCCGCCAGTGGGTCAGTCCGCCAGTGGGTCAGTCCGCCAGTGGGTCAGTCCGCCAGTGGGTCGGCCTGTGCAGCGGACACCACAGCGAGACCAGCGCCCACTCCCACCCTGAGCACCGCGGCCTGAACGCCGTCCTGCTCTACTTGGTTTGTCCGCAGCGCCGACCCGTAGTCCGAATGTTTTCCAAGATGGGGGAGAAGAAGACGTCGGCGCGCTCCCAGGAGGCCAGCCAGCGCCGGATCCTGGACCGGGCCACCCGGCAGCGCCGCCTGAACCGCCAGCTGGAGGCGCTGGAGAAGGACAACTTCCAGGACGACCCGCACGCCAGCCTGCCCCAGCTGGCCAAGCGCCTGCCCCAGTTCGACGACAGCAACGAGTCCGGTGAGGGGGGACTGGGCTACACGTGTGTGTCGTGTGGGGCGCGGTACTGCTGCGTGCGCTGCCTGGGGACGCACCACGAGACGCGGTGTCTGAAGTGGACCTTGTGaccccctctctgtgtctctgtgtggcCCCCGCGTTCCAGGTGCAGTTGTTTCGTGTCTGTTTGCTCGGCGGCTCTTTTCACAGGACGTGTCTGTCAGTGTTGATTTTGCAGTGAAATAAAGGCCCCCGTGTGACTATT

Function

GO: NA

KEGG:

id description
K11663 ZNHIT1, VPS71; zinc finger HIT domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164408 lncRNA downstream 49829 170453 ~ 212562 (-) False AMCG00011579
TU164344 lncRNA downstream 164562 96783 ~ 97829 (-) True G131152
TU164340 lncRNA downstream 197162 64893 ~ 65229 (-) True G131149
TU164296 lncRNA downstream 202294 53722 ~ 60097 (-) True G131114
TU164469 lncRNA upstream 92176 360230 ~ 360603 (-) True G131244
TU164759 lncRNA upstream 191456 459510 ~ 755699 (-) True G131425
TU164765 lncRNA upstream 193356 461410 ~ 462697 (-) True G131426
TU164778 lncRNA upstream 281985 550039 ~ 560333 (-) True G131428
TU164788 lncRNA upstream 359277 627331 ~ 630425 (-) True G131437
AMCG00011583 mRNA downstream 1800 254881 ~ 260591 (-) True AMCG00011583
AMCG00011579 mRNA downstream 78719 165892 ~ 183672 (-) True AMCG00011579
AMCG00011577 mRNA downstream 104995 145423 ~ 157396 (-) True AMCG00011577
AMCG00011578 mRNA downstream 123934 122359 ~ 138457 (-) True AMCG00011578
AMCG00011574 mRNA downstream 193608 65577 ~ 68783 (-) True AMCG00011574
AMCG00011584 mRNA upstream 12877 280931 ~ 282141 (-) True AMCG00011584
AMCG00011589 mRNA upstream 25398 293452 ~ 303818 (-) True AMCG00011589
AMCG00011588 mRNA upstream 45965 314019 ~ 320628 (-) True AMCG00011588
AMCG00011590 mRNA upstream 105310 373364 ~ 374190 (-) True AMCG00011590
AMCG00011594 mRNA upstream 345086 613140 ~ 619539 (-) True AMCG00011594
TU164448 other upstream 34630 302684 ~ 303915 (-) False AMCG00011589
TU164750 other upstream 146463 414517 ~ 415154 (-) True G131420
TU164816 other upstream 397323 665377 ~ 667310 (-) False G131456
TU164834 other upstream 445094 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 521965 790019 ~ 796419 (-) False AMCG00011601

Expression Profile