RNA id: AMCG00011583


Basic Information

Item Value
RNA id AMCG00011583
length 1268
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00011583
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 254881 ~ 260591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCATCGGGGCGGGTGGGGCAACTGACACATTCATGCCATTGTTTTCGTTGTGTACACGACCCCCTCTGGGCTCCTCCCACAGCCATGAACATCACCTGAGCGCAGGCTATCGACCCGAGCACAAGGCTGCGCCCTGCGAGAGGaactcctgtgtgtgtctggatctgtgtgtctgtctccgtgtgcgtgtttctgtgtctctgtgtgtgtgtctgtgtgtcagtgtgtgtgtgtgtttatctgtgtctgtgtgtgtcagtgtgtgtgtgtgtctgtgtgtcagtgtgtgtgtgtctgtgtgtgtgtgtttatctgtgtctgtgtgtgtctgagagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtttatctgtgcaagtgtgtgtgtgtgtctccggATGTACACATGAAGACGTGGCCGAgagtctgtctgtccctcctgCTGGCCCTGGGAGTCGTGCTGTACCTGGTTTCTCCTCACCTGTCCCTCGGCTCCTACAACAGGGGCAGGCAGGTGGCCGGCTCCACTGAAGCGGTGCTGAGGTGCACCCAGATCCGTGACAAGATCCAGAGGAAGAGTGCACTGAACGAggggaACTCCACTGTGTTCAGTTCAGATGTGACGAAGTTGATGAGCTGCCCTTGGACGGCCAACCCTACCCTGCAGGAGAGACTCAGGTCGGTGCTGCGCTCCTGTTGTGATGCCCAACAGAACCTGAGTCTGACCCAGAAGAACACACGGCTGGGCCAGCGGCTCCACTACGAGGTGAACAGAACCATCTGGCGCCAGGTGGACCAGGAGCTCTTTGAGATGCTGCCCCAGCGGCGGCCGTTCGTGGACACGGTGTCGTCGTTTGGCCTGGCTCCGCTCCTGCTGCCGGCCTTCGTGTTCCCGCACTGCACCGAGCCCTGCGTCCGGGCCTTCTACAGCCTGCTTGAGCTGCGGCCGCAGCAGAGGGCGCTGTTCTTCAGCCCGCAGTACCTGCGCCAGCTGGCTCTCTACTGGCAGCGGCAGGGCCTGCACCCGGTCCGTCTCTCCACCGGCATGATGCTGGCGAGTGTGGCGCTGGAGCTGTGCGACCATGTCCACCTGTACGGGTTCTGGCCGTTCCCCTTCGACCTCAGCCGCCGGCCGCTCTCGCACCACTACTTCGACGACGTCGGGCCCAAGCCGGGCGCCCACATGATGGCCGAGGAGTTCCTGAAGCTGCTGCAATTGCACAGCCAGGGGGCGCTGCAGCTGCACCTGGGCCCCTGCCCC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164408 lncRNA downstream 42319 170453 ~ 212562 (-) False AMCG00011579
TU164344 lncRNA downstream 157052 96783 ~ 97829 (-) True G131152
TU164340 lncRNA downstream 189652 64893 ~ 65229 (-) True G131149
TU164296 lncRNA downstream 194784 53722 ~ 60097 (-) True G131114
TU164469 lncRNA upstream 99639 360230 ~ 360603 (-) True G131244
TU164759 lncRNA upstream 198919 459510 ~ 755699 (-) True G131425
TU164765 lncRNA upstream 200819 461410 ~ 462697 (-) True G131426
TU164778 lncRNA upstream 289448 550039 ~ 560333 (-) True G131428
TU164788 lncRNA upstream 366740 627331 ~ 630425 (-) True G131437
AMCG00011579 mRNA downstream 71209 165892 ~ 183672 (-) True AMCG00011579
AMCG00011577 mRNA downstream 97485 145423 ~ 157396 (-) True AMCG00011577
AMCG00011578 mRNA downstream 116424 122359 ~ 138457 (-) True AMCG00011578
AMCG00011574 mRNA downstream 186098 65577 ~ 68783 (-) True AMCG00011574
AMCG00011573 mRNA downstream 191050 58725 ~ 63831 (-) True AMCG00011573
AMCG00011582 mRNA upstream 1800 262391 ~ 268054 (-) True AMCG00011582
AMCG00011584 mRNA upstream 20340 280931 ~ 282141 (-) True AMCG00011584
AMCG00011589 mRNA upstream 32861 293452 ~ 303818 (-) True AMCG00011589
AMCG00011588 mRNA upstream 53428 314019 ~ 320628 (-) True AMCG00011588
AMCG00011590 mRNA upstream 112773 373364 ~ 374190 (-) True AMCG00011590
TU164448 other upstream 42093 302684 ~ 303915 (-) False AMCG00011589
TU164750 other upstream 153926 414517 ~ 415154 (-) True G131420
TU164816 other upstream 404786 665377 ~ 667310 (-) False G131456
TU164834 other upstream 452557 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 529428 790019 ~ 796419 (-) False AMCG00011601

Expression Profile