RNA id: AMCG00011588


Basic Information

Item Value
RNA id AMCG00011588
length 3386
RNA type mRNA
GC content 0.65
exon number 13
gene id AMCG00011588
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 314019 ~ 320628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAATGTTTTGGTTCAGGCCAAGATGGCGGCGCGGCGTGCGGGCTGTGCCGTGCAGCGGACTCTCTCGCAGTGCAGCGCCGCCTCGCCTGTGCGCCGCGATCGGCCCCGGTGCTGCAGCGGGCCGCTGTTCCTCCTCGCCGTGCACCGGTACATGAAGGACCCGGGCGTCGGGCTGCACTTCCCCCAGGCCGTGGCGTCGTCCGAATGGCTGTACGACGCCACGCTGAGCGACGGGCACTGCCGCCTGCGCGCCACGCTGCACCCCGGGCTCAACGCGCTGGTGGAGGGGAACCGCCTGCGCTGCGGCTGCGAGCTGCGCAACGTCACCTTCTGCCCCGGCGCCGAGGAGGCGCACCCCGGACACCTGGTCCTGGACCTGGAGCTCAACGAGGAGGCGGGCGCGGCGGCGGGGCTGGCGGCCTTCAGCGGGGTGGATGTCGAAGCCCTGCCCTGGTTCGGCTCGGACCCAGACGGGCCGCCGAAGGTCGCCCCGCTGCGGGCCAGGAGGTGCTGCTACCTGCCGCTGTGGAACAACCAGGACTACTGTGGGGAGCTGTGGAGAGCGCGGCCGCCCAGCCCGCCCGCCGACTCGGACTCCGAGGAGACAGTGAGAGACCtgcagcctgtctgtctgcgtgAGCTGCGCCGCTCCTTCTTCAGTCGCTCACGCCGGAGGCAGAGTCACAGTCAGAGGCCGCTGACCGTCCGCGTGCTGCGCAAGTCCCGGCTGCTGCACTTCGGCAAGACGGACCGGGCCTGCGAGTGTCCCTATCAGGTCAGCCACATCCACAGCTACAGAGTGAAGGAGAGCTACGGCAGCCGGAGCGGCAGCGCCAGGGAGCAGGACATCGAAATCAGCCTGAATTCCCGGAACCCCTCAGCGGAGCTGGCGGTCGTGCCCGAGTCGGCGGTGCTGCCCCAGTGGAACCTGCCATCCGTGCCCTTCCACTTCCTGAGCAGGTAGTGCCCTCGCCCACTTCCACTTCCTGAGCAGGTAGTGCCCTCGCCCACTTCCACTACCTGGAGTCTCTGAACGCTGCTGTCTTGCAGGGAGGAGCTGCCCTCCTGTCCCCAGGGACACACCTGTGACTTCATCGGCCTGGTGACCTTCGCTGGGCGCCCGGAGCGCCTGAGGGTCAGAGGGCAGGGCGAGGAGCAGCTCAAGCAGTACCGCTGGCTGCAGCTGGAGGACGGCACAGGGGGGCAGCCGGTCGCTGTTAAGCTCTTCGCCACATCGCAGCCCGAGGAGCAGGCCGGGATCCACCCCCGTAAGAGCAGCTCTgtcacagtccagtccagcggggtctcagccctggtcctgagagacacagtccagtccagcggggtctcagccctggtccagagagacacagtccagtccagcagggtctgtAGAGGATTGTAGATCCCATTGACTGATGTGCTGGGGCTGCTGGgtcactctgtctctctgtccctcagtgTCTGTCCTGGTGTGCACCAGTGTCCAGCTGATGAAGACCAGCTCTGTCCACTACCTGACCAGCACCAGATACACGCAGGTGTACTGCACAGGGCAGCACCAGCGCCGGCCCTACAGGAGACTCCCCCCGGTGCGGCGCTTCATCCAGTGGCTGAAGACCGTGGACGAGGACGCCGTGGCGAGGAGAGCCGTGATTGGGGGGTTCTTCAGCTTCCCGCCCCTTGCTGCCTCCATGGACCAGTACCTGCAGGAGAGGAGCGGTGAGCCGGGCCAGGGAGTGATTGACAGGGCTGATTCCTGGAACAATGTCAAGAACCGAAATGCTCTTCATCTCTGAGTGTGACTGTGGTTTTCagaataaagcacattttaaaccaGGCCCAGCTCTCACACTGTAACGACAAACCTGACCTACTACTGAAATaaactgtgtctctgtgcgtctccctctctgtctgtgtgtctctgtgtctcactctctgtctgtgtgtgtgtctttgtgtgtgtgtctctgtctgtgtgtctccctctgtgtgcgtgcgtgtgtgtatgtgtgtgtctgtctctgtgtgtctccctctgtgtctgtgtgtgtgtctctttgtgtgtgtgtcgcagGGGACCCCGGGCTGGTGAGCGCTGCGGAGCTGCAGAGGGAGGCCGGGCGCTTGCTGTACCGGGAGCGCCGGTGCTTTGCCATCCAGGGCACCGTGGTCTCAGTGACACATAGCGACTGCGACAACACGGTCAGCGCTGCGCCCGGCTGTGACCCTGCGGACGAGCAGCTTTCCTGGAGCagctccagtgccccgctgtcgCCCTGCTCCTCCCTGGGCTGCCCCTGGTCCCCCAGGAAcagTGGCAGTGTCAGGCTGGGGGGCTCTGGCCGCAGAGCGCAGAAGAGGCTGTTTGTGGGGGAGAGAAGCCGATCAGAGCTGCCCAGGAAGAGGCTAGTCCTGCCCCCGCCGTCGCCCCGGTGGTCCGGCCTGCACACAGACGCAGACGCTGACAGTGGAGTAGGGTTCTCGCTGTGGGAGGCCACCATGGAGTTCCTGGAGAAAGATGACGGCGATGAggaaggggaggaagaggaCGGTGTTGGGGCCTCCTGTGGTGCCGCCCCCCCGACGGCGAGCCCGGGCAGAGAGTGGGCGGGGCCTCGGCTTGGCCGGGCACGGGCTGCCAGGGAGACGCTGCCGCGGCGGTACAGCCACGCCAGGAGGGAGGTGCAGGCGTTGGCGCTGGGGCTGCAGCCCGAGACCCTACAGCGCAGCCTGCCGGACAGCAAGCTGGACACCTTCAGCACCGCGGCCGGCTACAGCGGACACTACACCGTCACCCTGAGAGACCTCAGCCGCTCTCTGGTGGTCCAGGCCGTGTTCCTGCCCTCGTGTCCAGGAGACTGGCACTGCCCCCCCCTGCCCCAGGCGCACAGTAACAGCTGGCTGGCGGTCCTGGCTCACGGGGGCTTCTCCCCGGGCTCCCCCCCGCCGGCGCCCTCCGACCTGCTCTCCATGGCCGCCCAGCTGACCGGCCGCCggctgctgctggtgctggagTTGTGCcagctggggggggggcggctggAGGCGGTGCTGAGCCGCGCCTTCCCTCTGGATCCCTGCGGGTAGGACCCGGCGCCGCCCGACCCGTGGCCGAGAGGGTCATGTGACCTGGCATGTTCCTGCCCTACCAAGTGCCTGCTCATTCTGCTGTTCCTGTTATTTAtacagagtgagagagtgagagtgagtgagagagagaaattgagatgtctgtgtggttgtgtactgcatgttatttattggagttgtgttcagtgtgttgCGCTGTTCAGTGTGTAAAAGTGTCCAAATGTTCTGGATTCTGTatttctccttttgttttctgaagtcAAATACAGTTTGAAACAGTGCTGCTC

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164408 lncRNA downstream 101457 170453 ~ 212562 (-) False AMCG00011579
TU164344 lncRNA downstream 216190 96783 ~ 97829 (-) True G131152
TU164340 lncRNA downstream 248790 64893 ~ 65229 (-) True G131149
TU164296 lncRNA downstream 253922 53722 ~ 60097 (-) True G131114
TU164469 lncRNA upstream 39602 360230 ~ 360603 (-) True G131244
TU164759 lncRNA upstream 138882 459510 ~ 755699 (-) True G131425
TU164765 lncRNA upstream 140782 461410 ~ 462697 (-) True G131426
TU164778 lncRNA upstream 229411 550039 ~ 560333 (-) True G131428
TU164788 lncRNA upstream 306703 627331 ~ 630425 (-) True G131437
AMCG00011589 mRNA downstream 10201 293452 ~ 303818 (-) True AMCG00011589
AMCG00011584 mRNA downstream 31878 280931 ~ 282141 (-) True AMCG00011584
AMCG00011582 mRNA downstream 45965 262391 ~ 268054 (-) True AMCG00011582
AMCG00011583 mRNA downstream 53428 254881 ~ 260591 (-) True AMCG00011583
AMCG00011579 mRNA downstream 130347 165892 ~ 183672 (-) True AMCG00011579
AMCG00011590 mRNA upstream 52736 373364 ~ 374190 (-) True AMCG00011590
AMCG00011594 mRNA upstream 292512 613140 ~ 619539 (-) True AMCG00011594
AMCG00011595 mRNA upstream 334792 655420 ~ 656305 (-) True AMCG00011595
AMCG00011599 mRNA upstream 366503 687131 ~ 691008 (-) True AMCG00011599
AMCG00011597 mRNA upstream 379190 699818 ~ 720407 (-) True AMCG00011597
TU164448 other downstream 10104 302684 ~ 303915 (-) False AMCG00011589
TU164750 other upstream 93889 414517 ~ 415154 (-) True G131420
TU164816 other upstream 344749 665377 ~ 667310 (-) False G131456
TU164834 other upstream 392520 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 469391 790019 ~ 796419 (-) False AMCG00011601
TU165094 other upstream 1387089 1707717 ~ 1719226 (-) True AMCG00011645

Expression Profile