RNA id: AMCG00011595


Basic Information

Item Value
RNA id AMCG00011595
length 645
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00011595
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 655420 ~ 656305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGGCTCTGACACCGAGAAGCAGtgccCGAGGTGCCATGGGCCGATGAGGGTGGCGCCGGGCGGCAGTGCCATTGTGCCATGTCAGAGCTGCTCCATCTCCCTGCGCCGCGTCTTCCTGTTCTGCACCGACTGCGGGCGCGAGTGTGAGGGGCCGGCAGGGGAGGGCAGGGGCTGCACACGTAGTGACTGCGCTCTGCAGGCTGCCCTGCTTTCCACAGAGACGGTTGGCAGTGGCAGTGTGGCAGAGTGCCCTCTGTTCAGACAGTGCCCAAACTGCCAGGCCCTGCTGTCCCACACTGGGAGAGGCTGCCCCAGAGTGATGTGTCCGCAGTGCGGAGTGTTGTTCTGCCACAGCTGCCAGCGGAGGCGGTGCTCTGGAGAATGTATAACACACGACATCAGTGATGAAGACACTGGTGATGAAGGCATCAGTGAATCAGACATTAGTGAATCAGACAGTGATGAAGACGGTTATGGAGTCATCGGTGCAGAAGACATAACTGTTGAAGACAGTGATGAAGGCAGTGATGAACACATCGGTTATGAATTAATTGGTGATGAAGACATTGGTGCTGTAGGGCCGAGCCGTGCTGCTCCAGGAGTGACCAACCCTGCTGACCCGATATGCACTGTCCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164788 lncRNA downstream 24995 627331 ~ 630425 (-) True G131437
TU164778 lncRNA downstream 95087 550039 ~ 560333 (-) True G131428
TU164765 lncRNA downstream 192723 461410 ~ 462697 (-) True G131426
TU164469 lncRNA downstream 294817 360230 ~ 360603 (-) True G131244
TU164408 lncRNA downstream 442858 170453 ~ 212562 (-) False AMCG00011579
TU164818 lncRNA upstream 9072 665377 ~ 666287 (-) True G131456
TU164823 lncRNA upstream 37627 693932 ~ 698388 (-) True G131460
TU164846 lncRNA upstream 117872 774177 ~ 837898 (-) False G131471
TU164842 lncRNA upstream 178372 834677 ~ 837898 (-) False G131471
TU164843 lncRNA upstream 179264 835569 ~ 837898 (-) True G131471
AMCG00011594 mRNA downstream 35881 613140 ~ 619539 (-) True AMCG00011594
AMCG00011590 mRNA downstream 281230 373364 ~ 374190 (-) True AMCG00011590
AMCG00011588 mRNA downstream 334792 314019 ~ 320628 (-) True AMCG00011588
AMCG00011589 mRNA downstream 351602 293452 ~ 303818 (-) True AMCG00011589
AMCG00011584 mRNA downstream 373279 280931 ~ 282141 (-) True AMCG00011584
AMCG00011599 mRNA upstream 30826 687131 ~ 691008 (-) True AMCG00011599
AMCG00011597 mRNA upstream 43513 699818 ~ 720407 (-) True AMCG00011597
AMCG00011598 mRNA upstream 66779 723084 ~ 731850 (-) True AMCG00011598
AMCG00011601 mRNA upstream 133703 790008 ~ 810157 (-) True AMCG00011601
AMCG00011602 mRNA upstream 303801 960106 ~ 965129 (-) True AMCG00011602
TU164750 other downstream 240266 414517 ~ 415154 (-) True G131420
TU164448 other downstream 351505 302684 ~ 303915 (-) False AMCG00011589
TU164816 other upstream 9072 665377 ~ 667310 (-) False G131456
TU164834 other upstream 56843 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 133714 790019 ~ 796419 (-) False AMCG00011601
TU165094 other upstream 1051412 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other upstream 1051412 1707717 ~ 1719226 (-) False AMCG00011645

Expression Profile