RNA id: TU165095


Basic Information

Item Value
RNA id TU165095
length 6010
RNA type TUCP
GC content 0.44
exon number 6
gene id AMCG00011645
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 1707717 ~ 1719226 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccaacacacacaccaccctcCTCCTTTACCCCCCTGCTCAGGAGAAAGCATCAGTGACAGAAACACAAGGCGCAGCCAGAGCAGCCATAGTGGAGACGGGTTTGCAGCCGGGCGACGAGTCctgacacacagaaaaacacgcACATCGGTGGAGAAAACCGGGGGAATAACAGCCAGAAACATCGACGGCAGAAAAAGCGCATTTCGACGAgcagaggggagagaaaaggtGGTCTGGGAAGCGTCGGAAAAGACGGACAAACCAGCGGGAGCTGTGAAGGAGGggaagacatatatatatatttatatataatatatatatatatataggggtgcatcatcaacatcataataacaataataataataaaaagggttCGGtcatcaattaatcaatcaacacacaaataaacaaacaggcGATAGAAGAGGAGCTGCAACGCGCGGGTCCACATAGGATTTAGACACCCCCCACTTGACAGACTCGAAGGATAGAAATGTCTGCACCAGCCGCCCCCGCAGCAGGAGCCccagggggagagggaggcccccctgccccccagcAGCCCCCCAACCTCACCAGCAACCGGCGCCTGCAGCAGACCCAGGCACAAGTGGACGAGGTGGTGGACATCATGCGGGTGAACGTGGACAAGGTCCTGGAGCGTGATCAGAAGCTCTCTGAGTTGGACGACCGGGCCGACGCCCTGCAGGCCGGAGCCTCCCAGTTTGAGACCAGCGCTGCCAAGCTCAAGCGCAAGTACTGGTGGAAGAACCTGAAGATGATGATCATCCTGGGAGTGATATGCGCGATCATTCTGATTATTGTGATCGtgTATTTCAGCACCTAGTCGGACCGCCCGTCGGCACGTCTGCACAACCTGCTCTCGTCGCTGAAACGCAAggaccgaccgaccgaccgaccgaaATCTTCCGCCCCCCCNNNNNNNNNNCCCCCTTCCCTGCCTGGCCCAGTGTGTGAAGCCTGCCGTCTGGCTGTGTCCAGGACTGTGTAAATATGCCTACCCTTTCTTACCTATGagtataattatgattattattaatacgagaaaagacaaaagacaaaaaaaatgaccaCTTGcaattattgttatatatatgatatatatatttttggttctTTGTAGAGTATTATTCTTAGATGATGTTTCTAcgtgtattattattcattgcaTCAGAGGTGACTGCCTACTACCGGGGGGAAAAACAACTAATGTTTCCTGTATCTgtccctgtttctctctctctctttctctatttgGAAAGATTGGTGAACccgttgctctctctctctctctctctctctctctctcttaaaccAAGGTAATAGTTTTTGGATGACTTTTACcagcacactctctctctccctccctctctcttttaaaCCGAGGTATTAGTCTTTGACTATTAGCAACACtctacccctctctctgtctctctctctctctctctctctctctctctctatctctctctcgtTCCTTTTTTGTAAACTGCCACTTTAGACAGGACCAACGTGCGTGCCGTGTTTGCTTTTTTCGGGACTGATAATTTCTATGCGTGTTTTGCGTTTTCCTGTACATTCCTGTATAGCAGTGCCGTATGCTGTCTATATACCTATACGTGTAAACACGTTAttcgctctctctctatctatatatatatagatgtgtatatatatatatatatatatatatatatatatatatatatatatatattatatacacatataactACAGAACTACAATTACCAAGGCTTAGATCGCCAACTAAAAttgggaaaacaaatacaattatatcatgaataaataattgtccCATTGGCTATCTAGGATGCAACGgaaaggacaaaataaatactataattaGTCATTAGATTACAATAATAGATTAGAATTAGATCTCCCCTCTGTAGGACTATGTGTACctatctctctgtgtgtatcatgcatatatatatatagaaataacaCTAATTAGACAGGAACTTGATTCATAGACTTAACGACCCCTGTGACGCAGTTTTGGAACAATTGCGTTTGTCTTATTTGGAGGGAGGTGAGGGGGGCGTCTGCATCTGTACTAAAACTGTAGCTCCTATAAAAACGAAATTAAAAAGGATATCGATACCCGAATAAATTCCGACCACACAGCGACGGGATCTGAACGCACGGATctttgaagatgaaaaaaatgaTCAACCTTGCAAAATAACGGTGAAACTAATACATTCCTATCCACagcttttgtatattttttgatattcttctttgtttatttgaaatgaggTCATAATGTTTTGGAAGATAATAACTGGAGTCCTGACCCGGGTTTTGGTGGCATTGAGATTTAAACTGGGGCGGGGGGGCGGTGCTGGATCCTGCAGGGTCAGGGCAACAtctacaacaacagcaacacaaacacacaacccaGCACGACCACAGACGCTTACTGAGGTTAGTGGCCTGGGTActaggggagagggagagagagggagagtgtggaGGTAGAGCTAGGAGGGATGAGAGAAGGATGAGGTGGAGAAGAGAGGGGATGGAAGAGGAGGGcgaggagagaggaaggagaggagaagagatgGCAGTGGAGGTTTTTAGGAGCTTTATTGTTCACAACAAAGGCAATAGTAATCctagcttctctctctccctccctccctctctctctctctctcctcccagtTAGTTGGATACACTACACAACCTGACCACACACTATAAAACACTTctcattttctgttgttgttgttcttgttactGTAGCTGTTGCCTTTTTCTCtctgttcattatttttctctctccggTTACAgatctttttgtatttattattattattattattattattattattattattattattgttgttgtttgttgacAGTCGGCTCATTTCAGGAACTCTTTTTctggttgtttttaattttgcgTACTGCCACCAGTGAGCTCTGTCTAactctgtctgtccgtctgtctctgGGATACACTGCCACTGGACTGGGGAGAGAAAATATTCCTCCtttgtttatggtttaaaaaaaccCTGCTCGGCTTCAGCAGaatcaccctctctctctctctctctctctcacccccccactctcgtcactctctctttctctcatcaCCCCCACTCTCTTGTAACTCTCCCGCAACCTCTTCTGAgagtgtgtatgagtgtgtgtagccaagcgtgtgtgtgtgtgtagtggtgCGACGCGGTGAGTGCGTAGCTGAGCGTGTTGTGTGCCGTGGGTGCCGTGcgtgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgacagcGATTCCTGCTCTCACTCAAGGTACAATCTCCCAGGCTTAGCCCAGACTGGATTAGCCCGCTTACACGGGGCAGTAAGGGCAAGCTGTTCCCATGTCACCCAGCTACTAGAGAACGGAGGGGGCAGGACTCTGGAAAAGCAGCggatgggtggggggggcggagTGACGGGAAGCAGGAAGAGCAGGTTGTGGCTCCGCCCCCTCTCTTCCTCGTCCTAtacacacaattgtttttttttaaatccgtGACAGATGTGCTCATGGACAAAGTTGGGgatttccttccctctctccctctccctctctctctctctctctctctctctctctctctctctcattttgcaGTGcatccccttcctctctctctccctctctctctctctctctccttcatccACTTGTCTTCAtccacccctccccccatctCTGGAGAGCACAAACCACAAAGTCATAGCATTGAACATTAAAATCACTTCTGTCTATCTACCTATGTACCCTTATAACACTGACCAAAAATTGTCTTAACTATACTGCCAAATGCCACCAAGACTCCGTTGCATCGCAattcttttgtgtttcttctagtttttacttttttttccccccgttATTTTCTTCCAAAACCAGCTGTGGATCTCTCTTCTTCAGGAGTTCAACCTGTGACTTAAAAACGCGAAAGAGCGTCGAGGAGAAATAGAGGCCGACCGGCCCTAGAGTCAGGATCGGCCTTGATTATTGAggttttaacaaacaaatcagaaaaaacaGCGTATTATCCCATCGATAATCGTTCCAGGGAacaatctgtctgtctgaggaCACGGAGACTGACCCACGTGGGTGAACGAGGTCACAATTAAGATGGTGGATTCGCTAAATAGATCAATACATAAACCAGAATTTTGTTTCTGACTATGCTAGGATGCGAGAGTCCAAACTGAGGATAAAGAgaaaactaaacttaaaatcgtccactacattttatttttaaaaagatgacaGTTCGCACTGGGATACCTATGTAATGAGAATAATAGCACAAATCTTATTTCTTGATAGTTTGTGTCTGTGGTGTATACAACGacggaagaaaataaaaacaaaacatacatgagATTTTCATAATCGCTGTAgctgttaaaaacataaaaatacaaaaaaaatgtgttgtgtgacaTCATagggaaggggtggggggggtgaggaAGGTGGGCTGATTCGGATTGCCTGGCCtgatgacaaaattaaaaaaaaacctacagtAGTGATCTAGTTAGGGAGTAAAGGAGTCCAATAATTCAACACAGACAGGCAAATGGAGGGGTCACCTTTGGGGGGTCCTTGTCATCTCAGTGCATTGAAGTCCCAGAGGGGTCCTCGTATCGTCTGCGGGTCGTCCTGAGTGTGCTCGACTAAAAAAAGACATGACAACGAAACGGTGTTATCTATTGAATCGGTTGTTTATTTCTGTGGGCGtcgtgtatttatttctgaactCAAActggggcgggggtggggggtgatgCCCCTCTGATAACTCGGCCCAGCACGCGCTTCCGCCTCTTAATAAAGGAGGGAACTTTATGGGGCGAGAAGATGCCGCTTGGGCACGAGTTATGAAACGGGCATTGCTGGAACACTAACcactttattttgtactttttatttatttaatttatttgatggtGTTCATTTAACCAGtctgttgctgttattattattattattttagttttcttgtgtTTGGAGGCTCCACATGTCCCCGCTTTGAgcagaatataaatgtatgtctgaaaatatatacatatatatcagtTTAATGGTGTCTACCAGAGCCAGGCTGTGATGTGTTCACTGTATAATCTCGCACAACAACTTTTCGTCTTTTCTCCGTTGGCCCACTTTTCCAGCCAATTTTCTGCGGTCAAGACAGGACTGTTGGGCTAACGTTGGCAGAACCTCGGCCGGCTCGATCGTGGGGCGTCTTGAGTTCTAGATTCAATTAACCGACCCCCCAGCCAACAGACGGCCAGTGAGGGGTTAATGGGCGAGATTATAGGGTTACCATGAAAGGTCTTGTCGCATTGCATGATGGgacttttctgttgttgttaaatTAGTTCCCAGGTGTTGATAATAATCCCGCTGGGAATATGGAGCCACTACTGTTATAGTCTGGACTGTCTTTGTTatagttttttggttttgttttgtttgtgggtcagtgggagggaggggaaagTGGAGGGAAGAATTGTGTCTATATTACCCACAATCCCCGGCCTACAAGGAGGGACCTGGCAGGGGAATTCTGGGTAACGTAGGGCacaggattttgttttattatattttacccTTCAGAGGTTCTCCGTAATGGAAATGATCTAGCAGAGAGGATAAACAGACAACACAACAGTTATGTCATAGAATTACGATTGGGAAGAAAGCAGAATGAAACTTTTCAGTGTCTGATCAACGATAAATATCAAGACGatgggaaaagaaagaagaaaaaaaaactaaaacaagaatAATGATATTGACCTGTGTTTATTGTTCcgagttagaaaaaaaaaaaaaatgtatctgtaacaaaaaaaaatgacaaaaaaaaaagatgaacatgtgtgtgtgtgtgtgtttgaaatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165093 lncRNA downstream 3657 1696723 ~ 1704060 (-) False AMCG00011640
TU165059 lncRNA downstream 39037 1666554 ~ 1668680 (-) True G131633
TU165051 lncRNA downstream 64689 1642805 ~ 1643028 (-) True G131625
TU165041 lncRNA downstream 75957 1631457 ~ 1631760 (-) True G131615
TU165026 lncRNA downstream 101432 1606052 ~ 1606285 (-) True G131604
TU165149 lncRNA upstream 56263 1775489 ~ 1845721 (-) True G131691
TU165168 lncRNA upstream 137339 1856565 ~ 1857098 (-) False AMCG00011648
TU165180 lncRNA upstream 147567 1866793 ~ 1879291 (-) True G131709
TU165183 lncRNA upstream 147567 1866793 ~ 1879291 (-) False G131709
TU165222 lncRNA upstream 181367 1900593 ~ 1915550 (-) True G131741
AMCG00011640 mRNA downstream 2718 1686309 ~ 1704999 (-) True AMCG00011640
AMCG00011635 mRNA downstream 24185 1673442 ~ 1683532 (-) True AMCG00011635
AMCG00011634 mRNA downstream 37517 1668896 ~ 1670200 (-) True AMCG00011634
AMCG00011636 mRNA downstream 111518 1593707 ~ 1596199 (-) True AMCG00011636
AMCG00011627 mRNA downstream 172072 1529619 ~ 1535645 (-) True AMCG00011627
AMCG00011638 mRNA upstream 2471 1721697 ~ 1724576 (-) True AMCG00011638
AMCG00011639 mRNA upstream 7219 1726445 ~ 1735712 (-) True AMCG00011639
AMCG00011644 mRNA upstream 18415 1737641 ~ 1740415 (-) True AMCG00011644
AMCG00011641 mRNA upstream 22862 1742088 ~ 1750534 (-) True AMCG00011641
AMCG00011643 mRNA upstream 45517 1764743 ~ 1767565 (-) True AMCG00011643
TU164850 other downstream 911298 790019 ~ 796419 (-) False AMCG00011601
TU164834 other downstream 987435 713148 ~ 720282 (-) False AMCG00011597
TU164816 other downstream 1040407 665377 ~ 667310 (-) False G131456
TU164750 other downstream 1292563 414517 ~ 415154 (-) True G131420
TU164448 other downstream 1403802 302684 ~ 303915 (-) False AMCG00011589
TU165376 other upstream 574407 2293633 ~ 2296453 (-) True G131863
TU165669 other upstream 741881 2461107 ~ 2461750 (-) True G132117
TU165693 other upstream 847519 2566745 ~ 2577837 (-) True G132140
TU165695 other upstream 847519 2566745 ~ 2577837 (-) False G132140
TU165699 other upstream 894253 2613479 ~ 2614515 (-) False AMCG00011711

Expression Profile