RNA id: AMCG00011679


Basic Information

Item Value
RNA id AMCG00011679
length 792
RNA type mRNA
GC content 0.63
exon number 7
gene id AMCG00011679
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2198120 ~ 2199948 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACCGAGGACTTGCTGGTGTACTCCAACACCCTGTTCTACACTCCGGCCCCTTCCCCCGGCGGCATCATCCGGATGAACAACGCCTCCATCCCGCTTGAGTGCCACTATAACAGGATGGCCAATGTGAGCAGTGATGCCCTAAAGCCCACCTGGGTCCCCTTCACCTCCACTCGCTCTGCTGAGGATGTCCTGGACTTCTCCCTGCAGCTCATGACTGATGACTGGAGCTCCCAGAGGCCCTCCAACGTCTTCTACCTGGGGGACATGCTGCACCTTGAGGCCTCGGTCAACCTGACCGGCCACCTGCCCCTGCGGCTGTTCGTGGACCGCTGTGTGGCCACCCTGGAGCCGAACCAGACCTCCTCGCCCAGCTATGCCTTCATTGAGAACCATGGGTGCTTTGTGGACTCCAAGGCTACCGGCTCCAGCTCACGCTTCCTGCCGCGGCCCCAGGATTCTAGTCTCCGCATGCAGCTGGAGGCCTTCCGCTTCCACCAGGATGCCCGCAGCTCCCTCTACATCACCTGCCACCTGACCATGGCACTTGCCTCCCAGAACGATGCCCAGAACAAGGCCTGCTCCTTTGTGCAGAGATGGCAGTCTGTGGACGGCAGTGACCAGGTGTGCAGCTGCTGTGACTCCAGCTGTGACCCCGCCTCCAGGGCCCGGGGCTTGAGGCGCTGGAGCCGAGGGGCCCCATCTCCAGAGCAGGGGCTGGTCCAGGAGGCAGACGCCATGCTGGGCCCGTTCTTCATCATGGGCCGAGCTCCGCCCAACACTGCCCAGTAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165339 lncRNA downstream 138513 2058779 ~ 2059607 (-) True G131833
TU165243 lncRNA downstream 195928 2000409 ~ 2002192 (-) True G131756
TU165238 lncRNA downstream 249181 1947447 ~ 1948939 (-) True G131751
TU165222 lncRNA downstream 282570 1900593 ~ 1915550 (-) True G131741
TU165183 lncRNA downstream 318829 1866793 ~ 1879291 (-) False G131709
TU165386 lncRNA upstream 34664 2234612 ~ 2236805 (-) True G131871
TU165389 lncRNA upstream 46823 2246771 ~ 2247129 (-) True G131873
TU165403 lncRNA upstream 78285 2278233 ~ 2278516 (-) True G131884
TU165378 lncRNA upstream 86921 2286869 ~ 2298484 (-) True G131864
TU165409 lncRNA upstream 89562 2289510 ~ 2292486 (-) True G131889
AMCG00011678 mRNA downstream 1893 2188253 ~ 2196227 (-) True AMCG00011678
AMCG00011672 mRNA downstream 17832 2155079 ~ 2180288 (-) True AMCG00011672
AMCG00011673 mRNA downstream 81281 2097648 ~ 2116839 (-) True AMCG00011673
AMCG00011667 mRNA downstream 144569 2052011 ~ 2053551 (-) True AMCG00011667
AMCG00011666 mRNA downstream 166853 2022708 ~ 2031267 (-) True AMCG00011666
AMCG00011681 mRNA upstream 7873 2207821 ~ 2213289 (-) True AMCG00011681
AMCG00011684 mRNA upstream 15586 2215534 ~ 2225496 (-) True AMCG00011684
AMCG00011680 mRNA upstream 26388 2226336 ~ 2231073 (-) True AMCG00011680
AMCG00011677 mRNA upstream 36969 2236917 ~ 2238518 (-) True AMCG00011677
AMCG00011682 mRNA upstream 68023 2267971 ~ 2268189 (-) True AMCG00011682
TU165094 other downstream 478894 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other downstream 478894 1707717 ~ 1719226 (-) False AMCG00011645
TU164850 other downstream 1401701 790019 ~ 796419 (-) False AMCG00011601
TU164834 other downstream 1477838 713148 ~ 720282 (-) False AMCG00011597
TU164816 other downstream 1530810 665377 ~ 667310 (-) False G131456
TU165376 other upstream 93685 2293633 ~ 2296453 (-) True G131863
TU165669 other upstream 261159 2461107 ~ 2461750 (-) True G132117
TU165693 other upstream 366797 2566745 ~ 2577837 (-) True G132140
TU165695 other upstream 366797 2566745 ~ 2577837 (-) False G132140
TU165699 other upstream 413531 2613479 ~ 2614515 (-) False AMCG00011711

Expression Profile