RNA id: TU165699


Basic Information

Item Value
RNA id TU165699
length 458
RNA type TUCP
GC content 0.63
exon number 3
gene id AMCG00011711
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2609728 ~ 2617328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTCACCCCCGGGGCCGGCGGCCTGGCGTCACTGGGGGCGGGGCCGGCCGGCATGATGACCAACGACGCACTGCTGTTCCATGAGAAGTGCGGCACGCTCATCAAGCTCAGCAACAACCACAAGACGGCCGAGCGGCGGCGGCCGCTGGACGAGTTCAACAACGGCGTGGTGATGACCAACCGGCCGCTGCGGCACAACGAGATGTTCGAGatcCGGATCGACAAGCTGGTGGACAAGTGGTCGGGCTCCATCGAGATCGGGGTGACCACCCACAACCCCAACAACCTGGACTACCCTGCCACCATGACCAATCTGCGCTCCGGCACCATTATGATGAGTGGGTGTGGGATCCTCACCAATGGCAAGGGGACCCGCCGGGAGTACTGTGAGTTCAGCCTGGACGAGCTGCAGGTGagccctctccctctcattcgTTCTCTCCCCCTTTATCTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165691 lncRNA downstream 60220 2552358 ~ 2553259 (-) True G132138
TU165690 lncRNA downstream 62359 2550456 ~ 2551120 (-) True G132137
TU165682 lncRNA downstream 98266 2511503 ~ 2515213 (-) True G132129
TU165679 lncRNA downstream 114299 2492343 ~ 2499180 (-) True G132126
TU165668 lncRNA downstream 153518 2459748 ~ 2459961 (-) True G132116
TU165706 lncRNA upstream 19781 2634296 ~ 2634952 (-) True G132151
TU165710 lncRNA upstream 31058 2645573 ~ 2647388 (-) True G132155
TU165724 lncRNA upstream 111152 2725667 ~ 2726283 (-) True G132166
TU165817 lncRNA upstream 386522 3001037 ~ 3042256 (-) True G132233
TU165850 lncRNA upstream 464016 3078531 ~ 3089532 (-) False G132261
AMCG00011709 mRNA downstream 14277 2591859 ~ 2599202 (-) True AMCG00011709
AMCG00011703 mRNA downstream 102787 2496064 ~ 2510692 (-) True AMCG00011703
AMCG00011700 mRNA downstream 127749 2481091 ~ 2485730 (-) True AMCG00011700
AMCG00011699 mRNA downstream 140172 2468228 ~ 2473307 (-) True AMCG00011699
AMCG00011698 mRNA downstream 196883 2403971 ~ 2416596 (-) True AMCG00011698
AMCG00011710 mRNA upstream 24948 2639463 ~ 2641522 (-) True AMCG00011710
AMCG00011708 mRNA upstream 28148 2642663 ~ 2643127 (-) False AMCG00011708
AMCG00011707 mRNA upstream 41714 2656229 ~ 2656728 (-) True AMCG00011707
AMCG00011716 mRNA upstream 134679 2749194 ~ 2776484 (-) True AMCG00011716
AMCG00011715 mRNA upstream 170245 2784760 ~ 2785717 (-) True AMCG00011715
TU165693 other downstream 35642 2566745 ~ 2577837 (-) True G132140
TU165695 other downstream 35642 2566745 ~ 2577837 (-) False G132140
TU165669 other downstream 151729 2461107 ~ 2461750 (-) True G132117
TU165376 other downstream 317026 2293633 ~ 2296453 (-) True G131863
TU165094 other downstream 894253 1707717 ~ 1719226 (-) True AMCG00011645
TU165709 other upstream 28239 2642754 ~ 2643456 (-) True AMCG00011708
TU165967 other upstream 555193 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other upstream 555246 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other upstream 555246 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other upstream 555246 3169761 ~ 3173836 (-) False AMCG00011741

Expression Profile