RNA id: AMCG00011715


Basic Information

Item Value
RNA id AMCG00011715
length 768
RNA type mRNA
GC content 0.71
exon number 2
gene id AMCG00011715
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2784760 ~ 2785717 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACACCAGCCGACGGAGCTGCACCCCCCGCAGGCGGAGACTTGCGCCCCCTCGCACGGCAGACCCTTTGCCCCCCGCCCCATGGCGCTGGGCCCCCTCCAGCTGATGCGCACCCTGCGCGACTCCCCGGCCGCGCTGCGCCGCAAGTTCAGCCGCGACCGCACCGAGAGCCTGTCCCACGGGGACCCCCTGTTCAAAGTGCACTACCTGGGCACGGAGAAGATCTACTCCCTGGAGCCCGAGCAGGCCGAGGCGGCCATCGGGCGGCTGCTGGAGGGGGCGCCGCCGCGCAAGCTGGGCAAGGACCACGCGCTGGTGGTGCGGCCGCGCTATGTGGAGGTCAAGGAGATCGCCACGGGCCGCCAGCTCACCAAGACCTACCTGCAGGACATCGCCTACTGCGCCGCCGACTCGGCCCACCCCAATGTCTTCCTGTACATCTGCAAGCAGCGGGCGCAGCAGCTGCAGTGCCGCGTGTTCTGGTGCAGCCGGGCGGAGCGGGCGCGGGAGATGACCGCCTGCCTGGCGCGCTCCTTCCAGAGGGCGCTGTGCGATCTGCAGCAGCCGCCGGCCCCACCCACCACCGCCCCGGGAGAAGAGCTGGAGGGAGAGGGCTGTCCCGGGTGTCCGCCCCCCGAGCCGAGGAGCTCGGTCACGCTGCCGGCAAACTTCGGCAAAGTCCGCTGGAAGAAGAGGACGACCCACAGCCCCCTGAAGACCATGTCTAGGAGACTGACCGCGGGGGACCGCCGCTCTTGGGTCTGA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0061982 meiosis I cell cycle process biological_process
GO:0006950 response to stress biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko01524 Platinum drug resistance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165724 lncRNA downstream 58477 2725667 ~ 2726283 (-) True G132166
TU165710 lncRNA downstream 137372 2645573 ~ 2647388 (-) True G132155
TU165706 lncRNA downstream 149808 2634296 ~ 2634952 (-) True G132151
TU165691 lncRNA downstream 231501 2552358 ~ 2553259 (-) True G132138
TU165690 lncRNA downstream 233640 2550456 ~ 2551120 (-) True G132137
TU165817 lncRNA upstream 215320 3001037 ~ 3042256 (-) True G132233
TU165850 lncRNA upstream 292814 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA upstream 292814 3078531 ~ 3089532 (-) True G132261
TU165979 lncRNA upstream 450556 3236273 ~ 3237913 (-) False AMCG00011745
TU165992 lncRNA upstream 498104 3283821 ~ 3289291 (-) True G132362
AMCG00011716 mRNA downstream 8276 2749194 ~ 2776484 (-) True AMCG00011716
AMCG00011707 mRNA downstream 128032 2656229 ~ 2656728 (-) True AMCG00011707
AMCG00011708 mRNA downstream 141633 2642663 ~ 2643127 (-) False AMCG00011708
AMCG00011710 mRNA downstream 143238 2639463 ~ 2641522 (-) True AMCG00011710
AMCG00011711 mRNA downstream 167432 2609728 ~ 2617328 (-) True AMCG00011711
AMCG00011721 mRNA upstream 34626 2820343 ~ 2846905 (-) True AMCG00011721
AMCG00011719 mRNA upstream 62850 2848567 ~ 2852523 (-) True AMCG00011719
AMCG00011720 mRNA upstream 72369 2858086 ~ 2863415 (-) True AMCG00011720
AMCG00011722 mRNA upstream 78956 2864673 ~ 2870960 (-) True AMCG00011722
AMCG00011728 mRNA upstream 91559 2877276 ~ 2885423 (-) True AMCG00011728
TU165709 other downstream 141304 2642754 ~ 2643456 (-) True AMCG00011708
TU165699 other downstream 170245 2613479 ~ 2614515 (-) False AMCG00011711
TU165693 other downstream 206923 2566745 ~ 2577837 (-) True G132140
TU165695 other downstream 206923 2566745 ~ 2577837 (-) False G132140
TU165669 other downstream 323010 2461107 ~ 2461750 (-) True G132117
TU165967 other upstream 383991 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other upstream 384044 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other upstream 384044 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other upstream 384044 3169761 ~ 3173836 (-) False AMCG00011741
TU165976 other upstream 415653 3201370 ~ 3207354 (-) True G132352

Expression Profile