RNA id: AMCG00011726


Basic Information

Item Value
RNA id AMCG00011726
length 1743
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00011726
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2938292 ~ 2945893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCACACGCTCAGACCTGTGATCACGTCTTTGCAGCTAGCGCAGACTTTCCACAGCTGTGCGCAGACCTGCAcaatcccagcgatcccattggtgcagccgcgcagacctgcggaccTGTGCGCTCATCCGGCAGCAGGAAGAAGGAAGTGCGCCGCTGCCCCGCAAAGCAGATTCATTGCGCTTCTCATTGCCCTGCAGTCAGCTGGCCTCCGTGCAAACACCGCCTGACCTCAGGTTTCAGAGTGCCCGTGACCATGGACGAACGCAGAGACCTCCTTCAAAACATCCCCAAGCCACCCACGCTCAACACCCCCAGCCTAGgcGTGCTGTACCTGCACGACTGCCCCCGCCAGCGCTACATCCCCATCTACCTGGTGGTCTCGGGGGTCTTCACGGTGGCCCTCAGCCTGCTGGCCTGCCTGCCCTGCACTAAGAACGAGGAAGAGGGCGGCACCGGGGGGCTGCTGGGCAACGTCTGCACCACCTGGACATCGCTGGCgtccctcttcctcttctgctGGTTCATCACAGGGAACGTGTGGATTTACTCCATCTACCAGCCCAACTACACCCCCGGAGCCGCCGACTTCTGCAACAAGACGCTGTACCTGTTCGCCTTCTGGACGACCACCCTGGTGTACATCCTGCTGGGGGTGCTGCTCGTGGGGGGGTGCTGTGCCTTGCTGTGCGTGTGCATCTGCGGGGGCAACAACAGTGGGATCCTCAGAGAGGATGTTTAAAAttcccacccacccacccatcATCCACTCGGTGCGAATTCTTATGCCCAACAtgttcagtttctctctctttagcTCTGTCTCTTCCTCACCTGTCGTTCTggtctgtattttaattgcactaAAGTAATTGTTCATTAAATCGACCCTcccacacacagacgcacacacaagTAAATTGCAGcactgtctttttcttttgtttttaacaaatttCACTTGCATAACGATGAAAAAACTTGTCTTTCAAATATCCCAACATGGCCGTTTGCTTCCACAATCTGctctgatctgtgtgtgtgtgtaagtggtTTGTGGAGTTTGCTGCAGTCCCCTGGGTTGGCTGTGTgttgctctctctttctctctctttccgaACATGAAATGCACATGCACTTGCTACACTAAACAAAGAAACCCCTTGAAAGGTACCCcagtattgaaaatgtttacggcttttaaaagagagagggatggagagagagacagatgtgtACAAATACACCCGTGCCCTCCACTCAAGAAAATCTTCTCCATATCAACTGATGTCCGACTGTCCTCCAGCTGACTGTGACAGCGTGTGATTTTACGGTTTAATTGAACACGACTGTGCCTTCATAATGGGCCtctaattaaacttaatttcctgtgaattcattacttttttatttatttgtatatgtgtgccAATTGGATTTTCTGTTGTTTACACCATTGTGTTTCACAGATGAGTGGATATTAATGTACCCTCTGTTAGAAAAGCATTAAAAAGCCAATCAGAGCTTAAACACACTTGGAATCAGTGTGTATGACCTGTgcctttaaatattgttttgcctATAGGAGACCACTAGGTGGCGTCTGTACCCAGTCTGCTGAGACTGTGGTGTATTAAATTGTTTGCCAATAAAAGTGTCAGGAATGTCTCGAGTGTCTTGCCGTCTGTTAAGAGTGGTCCCGGTGTGGGGGGAAGTTAGTTGGCCAGAGATTGAACGTGCAGG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165724 lncRNA downstream 212009 2725667 ~ 2726283 (-) True G132166
TU165710 lncRNA downstream 290904 2645573 ~ 2647388 (-) True G132155
TU165706 lncRNA downstream 303340 2634296 ~ 2634952 (-) True G132151
TU165691 lncRNA downstream 385033 2552358 ~ 2553259 (-) True G132138
TU165690 lncRNA downstream 387172 2550456 ~ 2551120 (-) True G132137
TU165817 lncRNA upstream 55144 3001037 ~ 3042256 (-) True G132233
TU165850 lncRNA upstream 132638 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA upstream 132638 3078531 ~ 3089532 (-) True G132261
TU165979 lncRNA upstream 290380 3236273 ~ 3237913 (-) False AMCG00011745
TU165992 lncRNA upstream 337928 3283821 ~ 3289291 (-) True G132362
AMCG00011729 mRNA downstream 16061 2919841 ~ 2922231 (-) True AMCG00011729
AMCG00011731 mRNA downstream 28373 2900649 ~ 2909919 (-) True AMCG00011731
AMCG00011725 mRNA downstream 38443 2896690 ~ 2899849 (-) True AMCG00011725
AMCG00011732 mRNA downstream 48006 2885651 ~ 2890286 (-) True AMCG00011732
AMCG00011728 mRNA downstream 52869 2877276 ~ 2885423 (-) True AMCG00011728
AMCG00011727 mRNA upstream 8544 2954437 ~ 2962627 (-) True AMCG00011727
AMCG00011730 mRNA upstream 29658 2975551 ~ 2984794 (-) True AMCG00011730
AMCG00011734 mRNA upstream 110023 3055916 ~ 3065952 (-) True AMCG00011734
AMCG00011742 mRNA upstream 191092 3136985 ~ 3138296 (-) True AMCG00011742
AMCG00011741 mRNA upstream 225145 3171038 ~ 3173113 (-) False AMCG00011741
TU165709 other downstream 294836 2642754 ~ 2643456 (-) True AMCG00011708
TU165699 other downstream 323777 2613479 ~ 2614515 (-) False AMCG00011711
TU165693 other downstream 360455 2566745 ~ 2577837 (-) True G132140
TU165695 other downstream 360455 2566745 ~ 2577837 (-) False G132140
TU165669 other downstream 476542 2461107 ~ 2461750 (-) True G132117
TU165967 other upstream 223815 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other upstream 223868 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other upstream 223868 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other upstream 223868 3169761 ~ 3173836 (-) False AMCG00011741
TU165976 other upstream 255477 3201370 ~ 3207354 (-) True G132352

Expression Profile