RNA id: TU165967


Basic Information

Item Value
RNA id TU165967
length 2222
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00011741
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3169708 ~ 3173836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAGCCATTTCGCGTCCGTTCATACAATCGACCTTGGCGACGTCACACTGACGTCACCCCACCGCTCAGCTGACGAGTTCGGCTGTCACATGACTGCTCGCCGTGGAGTGTACCATGTGCTGGGAGGTGGAAGGGCGCAGGAGGATGTAAATTCCCTTGCTGTAGGCTGTATGGATTTTAACAACGGTACACACGGCGTCGAATACACAATTGCTGAACAGTAATATTCAATTTGTCATACcacaaatgttacaataaataatgtcaCATTATATATTCCGAGGAACGCTCCTGCTTTCTGAGTGGAGGAGTCCGGGTTTGGATCGATCCAAGTACAGAGGTGTTTCTGTTATCTTTGCAAACATCAACACAACCATATTCTTCAAGTGCATCTACGTGTATAACTATAGACACCCAACCGGTTCGAGCCGAGTGTGTACGGAAATAACCGAGGTCCGAGTCCGGAATCGGATCAGCTGAAATGCGGTAGAGAAGGGTCGGGTGTTGCAGCTTCTCTCTGACGGCACATCGGACACCTACAGATCCGCAGGAAAAGACAACTAACTGCACAAGAAGAGGGGACTCCACCCGTGCATCTGCAGCCATGGCGTCGCTTTTATTCTGCGGACCCAAGCTCGCCGCCTGCGGGATCGTCCTCAGTATTTGGGGGGTCATCATGCTGgtGATGCTGGGCATCTTCTTCAATGTCCACTCTGCAGTGCTGATCGAAGATGTGCCCTACACGGAGGCCGACATACTAAATGACTCAAACCCTCCTCAGACGGTGTACGGCCTGTATGACCAGGTCAGCTACAACTGCTTCATCGCGGCTGGCATCTACGTGCTGCTGGGCGGCCTGTCCCTTTGCCAGGTCCGGCTGAACAAGCGCAAGGAGTACATGGTGCACTAACGCCCCCTGGTGGCTCGGCACGGCTCGCAGGAtccggacacacacacacacacacacacacacacacacacacacactcactcactcactccaataaacatgcacacatgcacagacaaaCACTTTCGAATCCAGTGCTCTCCAGCCCAGTGGGTTTTTAAACCTCAGCCCTTCAAGTTCAGCCCGTTTGCTAAAGACTGGGTGTGCGGTGATCCGGTCAGGGTAGTTCCAAACCCTCGCCGTCGCCTACGACCGGACCAGACTGCTCCACTCCTGGCGTGTCAGCCGATCACGGTGACGGCGTTTTCCCCGTCTTTAGAAATCGAGGATTTTAAGGGGTGACTTACAAGACCTGACCTCCTTCCCCCCTGTAAATCGTATCCCTCCCTTTCATGTTACAAAGATTGGGAGCACACTGGACCAAATGGATATTAATTGGTTGTAAATGTATCGTTATAAAAGACCTATTAATACGGCAAAATTGTAGCTAGTGTCAGATTGGGCCAATAaaccctattattattattgttattgttataaaaACCGAAGATAATTGGCATCTTGGAAGTTTTATATAAATACGTCAATCTGATTGGTACTTTAAATGACTTGTGTGTGATATGATTGGTTAACAGAAACCTTGCATTCTGGGTGGGCAGGTTTGGGGTGAGTCTCGAGTCTTGGGACATGACCTTGTGACCTCCAGGACATCTACCCAAACTGGGCATCCCTTTAGGAGAAATGCACCTCCagctattgttgttgttgtagttgttgttattattataataagatCTCATGTGTTGCAGTGGTTGCGCTCAAGGTCTTCTCATTGGAAGTCACCAGGAAGGTCAGTTTCTATAAACCCAGATTCTCACGTATTACCCAGGATGCTCTCTGCCTAGTCcaccatttttatatataaataaaaatgggacTTGAGGTTGAACCATGGAGTCAGtgtggaaagagagagatcagggaggtagtggggggggggggtgacgcCATGATAAACACACCGCGCATGAGGGAGACTATAGGTTCTGTTAATATTATGGTTATTGTTGAAGTCAGTTTGAACAAGGATATTTATTATTCGTGAAGTTGAAAGAAAATTAAGCCCACACAAGTCTAGTCCATTGTCGAGACTCTTCCCCCACCACCGATGTGTAATACTGAagattttctgtaaaatgttgtgCTGCAAATCCAATGTGGTGTTTGTGTTCAGtgactgttctctctctctctatatatatatatatatatatatatataggtatattgtaaaataaactgttcaaTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165850 lncRNA downstream 80176 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 80176 3078531 ~ 3089532 (-) True G132261
TU165817 lncRNA downstream 127452 3001037 ~ 3042256 (-) True G132233
TU165724 lncRNA downstream 443425 2725667 ~ 2726283 (-) True G132166
TU165710 lncRNA downstream 522320 2645573 ~ 2647388 (-) True G132155
TU165979 lncRNA upstream 62437 3236273 ~ 3237913 (-) False AMCG00011745
TU165992 lncRNA upstream 109985 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA upstream 109985 3283821 ~ 3289291 (-) False G132362
TU166030 lncRNA upstream 246440 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 267559 3441395 ~ 3457472 (-) True G132395
AMCG00011742 mRNA downstream 31412 3136985 ~ 3138296 (-) True AMCG00011742
AMCG00011734 mRNA downstream 103756 3055916 ~ 3065952 (-) True AMCG00011734
AMCG00011730 mRNA downstream 184914 2975551 ~ 2984794 (-) True AMCG00011730
AMCG00011727 mRNA downstream 207081 2954437 ~ 2962627 (-) True AMCG00011727
AMCG00011726 mRNA downstream 223815 2938292 ~ 2945893 (-) True AMCG00011726
AMCG00011748 mRNA upstream 25851 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011746 mRNA upstream 29716 3203552 ~ 3207354 (-) True AMCG00011746
AMCG00011747 mRNA upstream 37888 3211724 ~ 3214816 (-) True AMCG00011747
AMCG00011745 mRNA upstream 62303 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011744 mRNA upstream 68364 3242200 ~ 3253579 (-) True AMCG00011744
TU165709 other downstream 526252 2642754 ~ 2643456 (-) True AMCG00011708
TU165699 other downstream 555193 2613479 ~ 2614515 (-) False AMCG00011711
TU165693 other downstream 591871 2566745 ~ 2577837 (-) True G132140
TU165695 other downstream 591871 2566745 ~ 2577837 (-) False G132140
TU165669 other downstream 707958 2461107 ~ 2461750 (-) True G132117
TU165976 other upstream 27534 3201370 ~ 3207354 (-) True G132352
TU166201 other upstream 703210 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 990795 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 1044713 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 1300769 4474605 ~ 4476979 (-) True G132693

Expression Profile