RNA id: AMCG00011742


Basic Information

Item Value
RNA id AMCG00011742
length 789
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00011742
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3136985 ~ 3138296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGACTGCAGTTTTGGTGGTGGCTCTGCTGTTTGGACAGCTGGGATTGTGTGAAGACCTGTCGGGCAAAGTCTTCATCTTTCCCGAGTACTCCGACACGGCGCACGTAAAGCTGTTTCCCTACAAAGAAGCCCCCCTGTACGCCTTCACCGCCTGCCTGCGCTTCATCTCCGACAGGCCGTTGGGGGCGCTGTTTTCCATCGCCACCCGAGAGATGCACAACGGCATTCTGCTACTAAAAGAACGCTCTGGATTCTATCAGGTCTACATCCAAAACCAAATGGTTGACTTCGTGGCCGTGGAAAAGCGCCCACCCGAATGGAACCACGTCTGCGCCACGTGGGAGTCGGGCACCGGCCTCGTCCAGCTGTGGGTGAACGGAGTGGGCAGCGTATTTCAGGGGCTGAACCGCGGCGGTTCCGTGGGGCCCCTGCCCAGCATTGTCCTCGGGCAGGACCAAGACAACTACGGGGGTGGCTTCCAAATCCATCAAAGCTTCCAGGGGCAGATTTCGGACGTACACCTGTGGGATCACGTTCTGCCGCCCTGCGAGATCTTCGACGTCAGCCGGGGTTCCACCTCCACGCAGGGGAACGTGCTGAATTGGCGAGCGATGCGCTACAGCATGGCCGGCTACGTCATCCTCAGGCAGGAGCCGAACCTGCGGCCCGATTGCTCCTGCACCAGAGAGGAGCAGTGGACCAGGGGAGCCGAGGTGAACGCCATTGAAACGTCCCAGTCCGGCGTGTCAAACTCCAGTACCGTGAATGGCCCAAGTGTGTTCTAG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165850 lncRNA downstream 47453 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 47453 3078531 ~ 3089532 (-) True G132261
TU165817 lncRNA downstream 94729 3001037 ~ 3042256 (-) True G132233
TU165724 lncRNA downstream 410702 2725667 ~ 2726283 (-) True G132166
TU165710 lncRNA downstream 489597 2645573 ~ 2647388 (-) True G132155
TU165979 lncRNA upstream 97977 3236273 ~ 3237913 (-) False AMCG00011745
TU165992 lncRNA upstream 145525 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA upstream 145525 3283821 ~ 3289291 (-) False G132362
TU166030 lncRNA upstream 281980 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 303099 3441395 ~ 3457472 (-) True G132395
AMCG00011734 mRNA downstream 71033 3055916 ~ 3065952 (-) True AMCG00011734
AMCG00011730 mRNA downstream 152191 2975551 ~ 2984794 (-) True AMCG00011730
AMCG00011727 mRNA downstream 174358 2954437 ~ 2962627 (-) True AMCG00011727
AMCG00011726 mRNA downstream 191092 2938292 ~ 2945893 (-) True AMCG00011726
AMCG00011729 mRNA downstream 214754 2919841 ~ 2922231 (-) True AMCG00011729
AMCG00011741 mRNA upstream 32742 3171038 ~ 3173113 (-) False AMCG00011741
AMCG00011748 mRNA upstream 61391 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011746 mRNA upstream 65256 3203552 ~ 3207354 (-) True AMCG00011746
AMCG00011747 mRNA upstream 73428 3211724 ~ 3214816 (-) True AMCG00011747
AMCG00011745 mRNA upstream 97843 3236139 ~ 3240000 (-) True AMCG00011745
TU165709 other downstream 493529 2642754 ~ 2643456 (-) True AMCG00011708
TU165699 other downstream 522470 2613479 ~ 2614515 (-) False AMCG00011711
TU165693 other downstream 559148 2566745 ~ 2577837 (-) True G132140
TU165695 other downstream 559148 2566745 ~ 2577837 (-) False G132140
TU165669 other downstream 675235 2461107 ~ 2461750 (-) True G132117
TU165967 other upstream 31412 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other upstream 31465 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other upstream 31465 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other upstream 31465 3169761 ~ 3173836 (-) False AMCG00011741
TU165976 other upstream 63074 3201370 ~ 3207354 (-) True G132352

Expression Profile