RNA id: AMCG00011744


Basic Information

Item Value
RNA id AMCG00011744
length 5927
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00011744
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3242200 ~ 3253579 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGGCGAGCTGGCCGAGGCGACCGCAGTAACACACAATCAACCCGAGCTCAGCCGCCCACCTGCCCAGCGCGCCGCACCGCCGTCTCTGCACAGCGGGCGACAGACCAGCCTCCTGCCGCCGAAGCCGCCGCCAAAGCCGCCGTCACCCCCCAATCGCTCCCCCATCCCTGTCACCCTGCTCCCCCAgccgtcccgtcccgtcccgtcccgtcccgtaCGCCCCGAGCCCCGCTGCCTGCCCCGCACACAGAGAGACCGAGCAGCCGGTCGGAGCGCCGCTCAGCCCGGTCACAGACGGGGAGAGGAAGCGGCGTCGGACATCAGACAAGTGTccaagacagacagagggacggACGGGCGAGCAGTGGTACACATGGCAACCCGCACAACACCGGAacaggacaacaacaacaacaagtgtgtgtgtgtaaggtgCTTCTTCAAGCAAGCCACAGCAAACCTCCCTTCCAGCACTCCTCCCGCCCTCCCTGTCCAAGACTGTAACAAAATGACCCGGCAATCTCCTTCACCCTACTCCTCCTCCCTtcccttcctccccctctccctcctctccctcttcctcctcctgcacCCGCTGCCCTCCAGCCAGGCCCAGGACCCAGAGCTGAGCATCTCCACCCGGCTGGGACGCCTGCGGGGGGTGCGTCTCCCCCTGCCCGACCGGGGCCACGTCAGCGCCTTCCTGGGCATCCCCTTCGCCGAGCCACCCGTGGGCAAGCAGCGCTTCCGCCCGGCCGAGCCCAAGAAGCCCTGGCAGGGCGTGCTGGACGCTATGACCTATCCCAAGGCCTGCTaccagtatgtggacacctccTACCCAGGGTTCCCCGGCACAGAGATGTGGAACCCCAACCAGGAGATGAGCGAGGACTGCCTGTACCTGAATGTGTGGGTGCCCTCCCCCCGTGGCCAGAACCTGACGGTGATGGTGTGGGTCTACGGGGGCGGCTTCTACAGCGGCTCCTCTTCGCTGGACGTGTACGACGGCCGCTACCTGGCCCACTCTGAGAAGGTGCTGGTGGTATCCATGAACTACCGCGTGGGTGCCTTCGGGTTCCTGGCCCTGCACGGCTCGCCGGAGGCCCCCGGCAACGTGGGCCTGCTGGATCAGCGGTTGGCGCTGCAGTGGGTCCAGGAGAACATCCACTCCTTCGGCGGCAACCCCAAGCTAGTGACCATCTTCGGGGAGAGCGCGGGCGGGGCCTCGGTGGGCATGCACCTGCTCTCCCCGGACAGCCGGCCCACCTTCACCCGTGCCATCATGCAGAGCGGCGTGCCCAACTGCCCCTGGGCCACCGTGAGCCCGGTTGAGGCCCGCCGGCGCGCCACCCTCCTGGCCAAGCTGGTTGGCTGTCAGGGCAGCAATGACACCGAGCTGGTGGACTGCCTCCGCTCCCGGCCGCCCCAGGAACTCATTGACCAGGAGTGGCTGGTCCTCCCGTACAACAGCCTCTTCCGTTTCTCCTTTGTGCCTGTGGTGGACGGAGTGGTCATCCCCGACACACCCGAGGCCATGATCAACTCGGGCAACTTCAAGGACACCCAGATCCTGTTGGGCGTCAACCAGGACGAGGGCTCCTACTTCCTGCTGTACGGCGCTCCGGGCTTCAGCAAGGACAACGAGAGCCTCATCTCCCGGGAGGACTTCCTGGAAGGGGTGAAGCTCAGTGTGCCCCACGCCAGCGACATCGGGCTGGAGGCCGTGGTTCTGCAGTACACCGACTGGATGGACGAGAACAACCCGGTCAAGAACAGGGATGCCATGGACGACATCGTGGGCGACCACAACGTCATCTGCCCCCTGCTGCACTTCGCCGGGGCCTATGCCCAGCGCGCGGCccagtcctcctcctcctctgcttcCTCCTattccccttcctcctcctctttctccacCTCTGCATCTGGGGGGAGCGGGGGAGCCTGGATGGGCGTGATCCACGGCTACGAGATCGAGTTCGTGTTCGGCCTGCCCCTTGAGGGACGCTTCAACTACACGGCAGAGGAGGAGAGGCTGAGCCGCAAGATCATGAGATACTGGGCCAACTTTGCCAGGActggtaaCCCCAATATCAACCCTGATGGCACGGTGGAGTCCCGGCGGCGCTGGCCGGTGTTCACAGCCACAGAGCAGAAGTACGTGGAGCTGAACACCAAGACGCTGAGCGTGCACCGCGGCCTGCGCACCCAGCTCTGTGCCTTCTGGAACCGCTTCCTGCCACGCCTGCTCAACATCACAGggAACATTGACGAGGCCGAGAGACAGTGGAAGGTGGAGTTTCACCGCTGGAGCTCCTACATGATGCACTGGAAGAGCCAGTTTGACCACTACAGCAAACAGGAGCGCTGTGCCGACCTGTGACctgtgacccctgaccccttTCCCTCTgaaccctgagagagagagagatgactgTGTCTGCTTCTGACTGGGTGTGagtgagcgagcgagcgagagtgtgtcagtgtctgccaAGTGCGTGTGCGCGCCAGGCAGTGAGAGGGGCCGCTCGGTGCGTCGgtcagtgcgtcagtcagtgtgtcggtcAGTGCGCCTCAGACTGCAGGAACGGCCACTTTTTCACGCCCGAATCCCACGTACACTGACAACGCTGATGACACTGTTCCCTTCTTCTGTTTCCTGTCCTATCTTCGTCTGTTACTTACTCGGTCGGtcggtctgtctgtgtgtgtctgagtgagactgtctctgtcagtgtgtgtctgtgcatctgtgtgcgtTCCTGGAtctgcgtgtctgtctgtgtttgtgcgtctgtctgtggatgtgcgtctctgtgtatttgtgcatctttgtgtctgtctgtgtgtgtttatacatcTGTGTGTCCGTGCATCTTTATCAGTTTGTGTGTCTATGTActtctgtgcatctgtgtgcgtctgcgtgtttgtgtgtctgtctgtgggtcCAATATCAGTTCCACAGTGGTTAACAGTAACAGGAGCCACTGTGTCACATTCTGTGTCCACTACACAACTGCACTGACAATACaaggctgtctgtgtgtgtgtacatccTGGGTACCTtgtcacacacattcacactttcacacacacacacacacacacacaaaacccacacatacacatgcaaggtgatggagaaggagggagggaggcagagggagaaggaggaaggagagggagtgCTAGgtaggagagggaggagagctAGAAGATGCCTTGACATGCACCGATCctacacaatatataaacaaacacacacacacacacacacagtatgctTTGAAGCTGTAACGGGTTCgactttgtctgtctgtctgactgaccATCCAACCTCACTTATATTTATGGGTTTATCCTGTTCAAAATACTACCTGCTGTCTATCCAATCTCTTAATAGTTACGGGTTTCATTCTCATTCtatgggtgtctgtctgtctgtgtctgtgttcatattggtctgtctgtctgtccctgtccgGTAAAACCCTCCAGCGTGTGTTTTGATTGGTCCAATGGTCTCCAAGGGCGCCGTTTGACTGGTTGCAGGTCCCAGGCAGGTCCCTCCCACTTTCCCTTGGAATTGGTTGAGAACTGTTCAACTTTAagcataaaaaattaaaaaacgatcttctatctatctgtcattatatatatatatatatatatatgagtgagACAGATCGACAGCAACAATTTTATGGCAGTATCGTCTATAAATACCACAAACcggatttttattttctttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgaatgACAGCCGCTCAAGCGCCTCTCGGCCACTAGGAGGCTCCCGCCGTCGCCCTCCTCCAATAGAAACCCTTCGCGCATGCCCCGGACCGCCCCCTTTATGTAACCCCGCCCCCTCCAATATCGTGACTGTTATCTACTTGTAATATAGCTGCGTGCCGCCGTGTAGACTTTCAGTAATGATTGATTATAGCAAACTCCGACATATAATTCCGATTATGATGTTAGCAATAATAGAACATAATAATTATTGaagatatttaatatttaaatacaacaatCTATTTATTACCtgttattataatgatgttCATAATTATTATGGCAATGTCTGGGAAATGTGAATTGTAAAGtgccatattttatatttttagtgcGTTTGCATTTAAAACTACCTGTTATATCCCCTATACGATTGATGATATCGATTtcaatgctgttttgttttgtttagttttttccttctcaatCGCGATTTTCTTTTCTGGCGGGGGTTTGTGTGTGGGGAGGATAGTTGCCAAATACAGACCCGCACTGAAGCAGATTTGGTCTCTCGcttcctgttgtgtttttggcTCCGTCTGGCGGCGACACCGCGGAACTACAAGCTGCTTGTGGGGGAAACAACCCCAAAACGTGTCGACTAATGGTATGACCCAAACATCTGTTGGTCTAAAACGCATGGGACGGTCCATTGTGGTATTTTCTGACAGGGGAGTTCTTGCTCAAGTGGGCGGTGTCGGTTGGGGGCAGAGTGGCTATAAACAGCCATAGCTGGCACCAAACAGATATCGTTTTCTGTGCTGTCCTGGTCAGTATATCGTTGCCAATAAACATCTGTAATGGGCCATATTAACCCTGAGTTTGTGTAGCTGGTGTTCTTCAGTTCGCCACTAGATGGAACCGTTTCCCACCGCGTAGGCCCCTTTGCTTTGACTCCAGCCTGCCTTCTGTGccctttgtttctttattcGTTTTTCGTTTTTCTATGGAGATTCCAGACATTGCTCTCTGTGCCAAACTGCCCCTGATTGACTGCTGTTGTACCAAATCCTCTGCATGGTGCTCTTTGTGTCCCCGCCCCCTCCACCTGCCACCAGCCCACCAACCGCCAAGCAAAATAAACCAACCTGATCAGAAAAACTCAGACAGCTGCCTGACTTTATTTCCCTCTGAGTCTTTCTCTGTGCGTCTGACTCTCTTTTGgcgtctgtctctctgtgtgtctctgacCCTCCCCGTGTTGCTATTtctttcagtgtgtctgtctctatttctctctgcctctttcaCTATtactctctcttcctccctctccctctgacTGTCCCTTTTTCTCTATCTATGTTTCAGCTCATTCCCTAGTCAGTGGAGGAGGTGCACAGTGTGTTACTGGGCTGTTTAGTGATGCTTCATCAGTAGAGCATAACTTTCCATTGCAAAACATCCAACTACAAAAAgcacccccacctccctctccctttccctctccctctcttgtgctctctctctctcaggtttaAGCTTATGGAAGTATTGCTACTTAACATGgcaaagtacacacacacacaaaaacagaccaATAATAGCACTGAgcacctctctttctctctctccctctgtcattCTTCCCTCTAGCTTCCTGTCACCTCTGCCTTCACacttctctccttctcccttttaCACTATCCAGCAAGTACTTTCAgactctctctctacctctctttctctgtctctgtaggGGGAAAAGATATGTTCTGTTACACCACACTATGGTTGTACAATCATTACTTATATAAAGTAAACATCTCTGTCTCCACACTGAGCTAAAAATTGAGAGAATAGTCCAGAGCATCTTGAGAATTATGACCAACCAGAATACAGCTCAACCTGAAACTgttgaatatttaatgtatctGCACGAGCAGGAGGAATCtgtaattcatgttttgttttgttttctccagaaACTTTAGaagatacagctctggaaaaaattaagagaccactgcaattgtttcttaaatcagcatctctacatgtatggcagccattccattccattcatgtttttatttggaa

Function

GO: NA

KEGG:

id description
K01049 ACHE; acetylcholinesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165979 lncRNA downstream 4287 3236273 ~ 3237913 (-) False AMCG00011745
TU165850 lncRNA downstream 152668 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 152668 3078531 ~ 3089532 (-) True G132261
TU165817 lncRNA downstream 199944 3001037 ~ 3042256 (-) True G132233
TU165724 lncRNA downstream 515917 2725667 ~ 2726283 (-) True G132166
TU165992 lncRNA upstream 30242 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA upstream 30242 3283821 ~ 3289291 (-) False G132362
TU166030 lncRNA upstream 166697 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 187816 3441395 ~ 3457472 (-) True G132395
TU166079 lncRNA upstream 314308 3567887 ~ 3568440 (-) True G132434
AMCG00011745 mRNA downstream 2200 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011747 mRNA downstream 27384 3211724 ~ 3214816 (-) True AMCG00011747
AMCG00011746 mRNA downstream 34846 3203552 ~ 3207354 (-) True AMCG00011746
AMCG00011748 mRNA downstream 40625 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011741 mRNA downstream 69087 3171038 ~ 3173113 (-) False AMCG00011741
AMCG00011751 mRNA upstream 89855 3343434 ~ 3348414 (-) True AMCG00011751
AMCG00011752 mRNA upstream 96874 3350453 ~ 3357400 (-) True AMCG00011752
AMCG00011753 mRNA upstream 110507 3364086 ~ 3391464 (-) True AMCG00011753
AMCG00011756 mRNA upstream 246061 3499640 ~ 3502460 (-) True AMCG00011756
AMCG00011758 mRNA upstream 261790 3515369 ~ 3520747 (-) True AMCG00011758
TU165976 other downstream 34846 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 68364 3169708 ~ 3173836 (-) False AMCG00011741
TU166201 other upstream 623467 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 911052 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 964970 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 1221026 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 1221026 4474605 ~ 4476979 (-) False G132693

Expression Profile