RNA id: AMCG00011746


Basic Information

Item Value
RNA id AMCG00011746
length 1604
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00011746
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3203552 ~ 3207354 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCATCCAAGGCGACTCAAAGTCAATAATATTACATCACATAAACTGGACGTGATTGTGCACCCTTGCTTTTGtaacttattattatgatcagaGAGAGTGCAATGCAACAGCCCGGCACTGCGAGGCGCCGTTTCGCTGCCTATGCCACGGCAATGAATACATTTAGCTGCAGAGTATAcgaaaaacaatttaaatgtgtgataTTAAGAAGATTTGGGGATTGTGGCGAGTTTGCGGCTAGTTTCGGGACCAGGGCGCAGCGGGACGCAGGGACACGGTGAGCGGGGAGCCTCTGGACGGGCCGAGCATTGACAGGTGGTGGAGCTTTTTTTTGGTTGGGGAGACAAAACCGCCGATAATAACCGTTTACGGGGGAAATAGATGTCCGGGATTTAAACTTCGGCTCCTGCGGGGGGAAAAGTTTGCAAATGCGGCGTGGGATGACAACTTCCGCGGCGCAGGCGTAGATGGGCAGCGGCGGCGGCGCCACACCGTTATTCCAGCCCTTTTGCCCCGCTTGAACTTTCTGATTTCGCCTCCATGGAGGTATTTGCAATGGAAACCAACTAATCTGCCAACTTGCTCCACGTCTCACGTCGGCACCGCGGGCTtctccccaacccccaccccctgcacGGCCGGCTCTCGCTTTACACGGCCCCCCGGCTCCAGCTTTTCCAGGAGCAAACATGCGATAGTGGGGGACCCGGGGAAAGAGGCGACAGTGTCCCGCCGTTCCCCGCGGTTTCGGCTCACTTTGGACCGAGCAGGTCGGCGGTGAGGCCTGCGGGTCGGGCTTTCACCGGGCTAGCGTGAGTGCGCCTCGCCGGCTTCGGGAGCGCAAAGGTCGGCGGCAGGGGCCTCAGCGAGCCCGCAGGCCCGGCCAGACGAGATGGAGCGGATGGAGGTGGACCAGTGCGCAGGCGCAGCGGCGGTCAGCGGGGGCGGGTCTCTGCGGCGGTCCAACAGCGCCCCCATGATCACCGGTGTCAGtgatgGGGCCGCAgtgttcagctccagctcctcaGCTCGTTACAGGAGGAGCAGTGTGTCTGTCAACCTCAGCTGTCCAGGACTGGCCCTCCCCTTATCGCCATTCCCATTGGCCAGCGGACGCCTGGAGCACCCAAAAcagCCCAACGAGAAGATTCAGAAAtGTCTCTCCTGCAGACTCTCCTCCAGAGGGGGTGTCTGGCTGTGCCCCCCCCCAGGGCAGCCCCCTCTCTCTGGCTGTCAGCCTGCCCTCGCCCCCGCCCTTCACCTCCCAGCACCAATCACGGCTCGGGATGCCTCACCAGCCCAGCCAATGAGAGCCCGGGACGAGGAGGACACTAGCCCAGCCAATCAGGAGGGAGGAGCAGGCGGGGGGAAGGCAGCGAACCTTGAAACCCCACCCTCCCTCGTccctcagccaatcacagacctGGGTGTGTCGCCAAAACGGAGCGAGGAAGAGAAAGGgactcagccaatcacagaccaGGAAGGAAAAGCGTTCGGCCAATCAAATGGAGGACAGACCCAGGAGCTGCTCGATGGGGGCGGGAGGCAGGCGGGGAGAGGAGCCTATCGGAGGAAGGCTGATGGGACAGTTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165850 lncRNA downstream 114020 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 114020 3078531 ~ 3089532 (-) True G132261
TU165817 lncRNA downstream 161296 3001037 ~ 3042256 (-) True G132233
TU165724 lncRNA downstream 477269 2725667 ~ 2726283 (-) True G132166
TU165710 lncRNA downstream 556164 2645573 ~ 2647388 (-) True G132155
TU165979 lncRNA upstream 28919 3236273 ~ 3237913 (-) False AMCG00011745
TU165992 lncRNA upstream 76467 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA upstream 76467 3283821 ~ 3289291 (-) False G132362
TU166030 lncRNA upstream 212922 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 234041 3441395 ~ 3457472 (-) True G132395
AMCG00011748 mRNA downstream 1977 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011741 mRNA downstream 30439 3171038 ~ 3173113 (-) False AMCG00011741
AMCG00011742 mRNA downstream 65256 3136985 ~ 3138296 (-) True AMCG00011742
AMCG00011734 mRNA downstream 137600 3055916 ~ 3065952 (-) True AMCG00011734
AMCG00011730 mRNA downstream 218758 2975551 ~ 2984794 (-) True AMCG00011730
AMCG00011747 mRNA upstream 4370 3211724 ~ 3214816 (-) True AMCG00011747
AMCG00011745 mRNA upstream 28785 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011744 mRNA upstream 34846 3242200 ~ 3253579 (-) True AMCG00011744
AMCG00011751 mRNA upstream 136080 3343434 ~ 3348414 (-) True AMCG00011751
AMCG00011752 mRNA upstream 143099 3350453 ~ 3357400 (-) True AMCG00011752
TU165967 other downstream 29716 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other downstream 29716 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other downstream 29716 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other downstream 29716 3169761 ~ 3173836 (-) False AMCG00011741
TU165709 other downstream 560096 2642754 ~ 2643456 (-) True AMCG00011708
TU166201 other upstream 669692 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 957277 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 1011195 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 1267251 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 1267251 4474605 ~ 4476979 (-) False G132693

Expression Profile