RNA id: AMCG00011747


Basic Information

Item Value
RNA id AMCG00011747
length 1029
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00011747
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3211724 ~ 3214816 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatagagagagagagaaagaaggagaaagagtcgcaggaggaggggaggaaagCGAGGTTGAAAGAGTaaagggaggggaggaggaggagaATCGACCTGCTTAtccccccacacccacaccaGCTAGGAACTGGGACggggacagagggacagggaCGGAAAGAGACACCGTGGGGGACATCCAAAACAGGAATGCTCGGGCTGCCATCACCAGTGTCATGGAGTCGGGCGCCGTGACGAGGACCGGGGCGCACCCCGCGTCAACCATGACCACCACCCTCGCCACCATGGAGACCAGGGCCGACAACTACAGCTGGAccttcccttcctcctcctcctcctcctcctcctcgccccCTTCCTGCAACATCGACGAATCCTACAAGGGAGGCGGTGGGGGAAAGGAGGAGGTGGCAGCAGGATACCTGAACTGCTGGGACGACGCCATTGACAAGGAACTGGCCGTGTATGTGCCCTACGCGGTGATGCTACACATCCTGGGCTTCTTCCTGCCCTTCTCCGTCATCGCCTGGTGTTACTCCCGGGTGGTGCTCACCATCGTGCGCTCCCTCCGCGCCCCACCCCTGCCCCCGGCCGGACGGGGAGGTGCAGCCAGTAGGGCCCTCTCGGCAATGGCCATGGCTCCCCAGTCGCCGTGCTTCCGCAAGCGGCGCAAGTCGGTCAAGACCATCGTCACCATCACCCTACTCTTCGCCCTCTGCTTCCTCCCCTTCCACGTGACGCGGACCCTCTTCCTGCTGCTCAAGCTGTCCCCGGGGCTGAGCTGCAGCTCCATGCGCCTGGTCTCCATCTGCTACAAGGTGACCCGCCCGCTGGCCTCCTTCAACGCCTGGCTCAACGCCCTGCTCTACTTCCTTACCAAGGACAAGGCCCCGGCCCACTGCCCCCCGCCCCTCCGCCTGCCCTGGCCCCTGCGCCTGATCCGACGCCCACGGGGAGGGGCGGGAGGGCCAGGGGGGGAGGAGTCCAAGTCTTCGGGGAATGTGTTTCACAGTCTGCCGTGA

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165850 lncRNA downstream 122192 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 122192 3078531 ~ 3089532 (-) True G132261
TU165817 lncRNA downstream 169468 3001037 ~ 3042256 (-) True G132233
TU165724 lncRNA downstream 485441 2725667 ~ 2726283 (-) True G132166
TU165710 lncRNA downstream 564336 2645573 ~ 2647388 (-) True G132155
TU165979 lncRNA upstream 21457 3236273 ~ 3237913 (-) False AMCG00011745
TU165992 lncRNA upstream 69005 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA upstream 69005 3283821 ~ 3289291 (-) False G132362
TU166030 lncRNA upstream 205460 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 226579 3441395 ~ 3457472 (-) True G132395
AMCG00011746 mRNA downstream 4370 3203552 ~ 3207354 (-) True AMCG00011746
AMCG00011748 mRNA downstream 10149 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011741 mRNA downstream 38611 3171038 ~ 3173113 (-) False AMCG00011741
AMCG00011742 mRNA downstream 73428 3136985 ~ 3138296 (-) True AMCG00011742
AMCG00011734 mRNA downstream 145772 3055916 ~ 3065952 (-) True AMCG00011734
AMCG00011745 mRNA upstream 21323 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011744 mRNA upstream 27384 3242200 ~ 3253579 (-) True AMCG00011744
AMCG00011751 mRNA upstream 128618 3343434 ~ 3348414 (-) True AMCG00011751
AMCG00011752 mRNA upstream 135637 3350453 ~ 3357400 (-) True AMCG00011752
AMCG00011753 mRNA upstream 149270 3364086 ~ 3391464 (-) True AMCG00011753
TU165976 other downstream 4370 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 37888 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other downstream 37888 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other downstream 37888 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other downstream 37888 3169761 ~ 3173836 (-) False AMCG00011741
TU166201 other upstream 662230 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 949815 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 1003733 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 1259789 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 1259789 4474605 ~ 4476979 (-) False G132693

Expression Profile