RNA id: AMCG00011751


Basic Information

Item Value
RNA id AMCG00011751
length 2398
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00011751
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3343434 ~ 3348414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCAGTGCATCCGAGTGTGCGTCTGCGCTCTGTCTGAGCTTCGCCGGCTTCCGTAGCTCAGTCTGTTCCTCCTGTGTGACATGTCGTAGGAGCAACGAAGTTTGGCGAGAGCGCGTGGCCCCTGTGCGCTACGGGGCGTCCGGGGAAAGCTTGGAACCCGTGCGGCCAGGCTGGACGGCCTGGACCCGGGCCGAGAAACGCCGGCTGCTGGCCGCCCTCCGCCAGCAGCGCTTCTTCCCACAGGTCGACCTGCAGGGGCTGCAGGAGAAAGTGCGCGGTCACAGCCAGAGCGAGATCTCGGAGTACCTGGAGTTCCTGAAGGGTCGTGTCGGCTACAGGGTGGCCCAGCATCTGTCCAGGCAGCGGCTCGAGGAGAAGAGGAGGCGGGTGCCCGTGCAGCGCTGGGCAGAGCTGGCGCAGGACATGGCTGGGACGGTGGAGGTGCCCATCGCTGCTGCATTCTCCCagATGTTGGTGATCGCTGCCACAGAGCCCTGTAGTCTCATGCACTCTCTGCCACCTCAGCCTCTCAAGCTGGAGGACAAAACATTCCCGCCTCTGGGACGGCCACACCTGTCTGCTCCAATGAGAGTGAGCCAGCAAGTACCGACCCTGCTTTCCAGGACCACCTCCACCAACCACAGCCCAGCAGCTCACGGAAACCCAGTAATGCCATCCACTGTCCCACAGTCCTCCAGTCAAAACTCTGCAAGGCCCGCCCACCTGCTGACCTCCTCCAATCCAGTATCGCCACCTGTGAGTTCATCCAATCCCAGCCCACAATTACCCCTTGCCTCCAATCCCACTCCTGCCCCACCTACCAGTCATCCTGCAGGTCACTCAACACACTCCGATCTGAATCAAGCCCAGTCGCCTGGCCCGTCCAATAGGAGCCAACCCCACACGGACGCGCAGCCGGCCTCGTCCAGTCAGGTTTCGGGAAGCGCAAGGCCGACATCCCAGCATGCCGCAGGGAGTGGGGCGCTGAGGGTAGATTTCGAGAAGCTGTACCGCTACCTGAACGCCATGGCCAAGCAGACCAGTGAGCCCCCGCTGACAGCACTGGAGAGTGCCGTGCTGCTGGACCTGCTGATGTCTCTGCCGGAAGAGCTCCACCTGCTGGAGGGCCGGGAGCTGCAGCACCACCTGCGCCAGGTCCACAGCCGCCTGTCTGCCCCTGCCGAGCCCCGTACCCCGGGCCGTCGCCGCTCCTCCCCCGCCAAACCGGAGACAACGGCACAGACTGCAGCCGATCAGGAGGCAGGCAGCCTTCCTCCGCCTCCTGCCGACAGCGGTGTGGAGAACGGAGGGCGGGGCCAGACCGTGCCTGCCAATCACGAGCAGGAGAGCAGCAGTCATGAGATGGGCGATGGAGACAGGCCAGCCAGTTGGAGTGcagctgggattgaacccaccaATGAGAGCGGGGCCGCCGCAGTGTCCACCAATGAGACTAAAAGCGCCATGACGCCAGCCAATCCAGAGACAGAGCCTTCGTCGGCCATCAGTGAGCAGGGAGGAGTGGAGCAGCCTGCAGCGATGCCATTGGCCACAGAGACTGCCAGTCCAACCCCCGGCCACTCACATCCCTCCGAGACACCCACACCTCAGCAGGACGCGGGGAAGGACAAATCTGATTGGCCGAAAGCAGGACTGTGCCCTTTGAACCCCTTCATGATCCCTCTGAAGCTCCTGGCACAGAAGGGGTCTGGAGAGACGGCGGGGTGATGTCATAGCTAGAACAGATCATTTAGATGTCTGTGTGATGTCATACTGCCCCGCCCCCCAACAATTCTGTAGAACTGTACATAATTCAtacttttttctaatttatatttataattattgtttttgtgttttaggcacttaattgattatttgtgttaaaataagTGTGACGAGCAGTACGGATGTATGTATGAAAggcaagaaaaagtaaaagacaAACGACTTgattaagtaaaaacaaatatttgtatttagcaAAACCTCATGCATACAATTCTACATGTAGCCACATCTGAAAATGTTCATaagttatatacaaataaaaccaataataaaatatacaatttatattaataatctgatttttttttagcaatgaGTAACTTTAAAAACCACTTTAACCTCATTCAAGCAGCAATGTTTCCTTGTAGATTAAGAAAATTGTACATTCTTCAGTTCGGTGCACAGCAGTTTTTAAAGACAACACAAAAGCCCCCTTAAAGTGACCCTTACACAATTTCCAGCAGAAAGCTAGCTTGTTTTTTTGGCCTGTTTGTTCTATTGTTGTTTCCTAGGGAGCTTAAGTAGGGATTGTTTCCAGATCTtagttatatttttgtgccTGTCTGAGGCaatgtaacataaataaatacaaatctttctctta

Function

GO: NA

KEGG:

id description
K15209 SNAPC2; snRNA-activating protein complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165992 lncRNA downstream 54143 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA downstream 54143 3283821 ~ 3289291 (-) False G132362
TU165979 lncRNA downstream 105521 3236273 ~ 3237913 (-) False AMCG00011745
TU165850 lncRNA downstream 253902 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 253902 3078531 ~ 3089532 (-) True G132261
TU166030 lncRNA upstream 71862 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 92981 3441395 ~ 3457472 (-) True G132395
TU166079 lncRNA upstream 219473 3567887 ~ 3568440 (-) True G132434
TU166134 lncRNA upstream 280348 3628762 ~ 3702912 (-) True G132482
TU166157 lncRNA upstream 405414 3753828 ~ 3785207 (-) True G132504
AMCG00011744 mRNA downstream 89855 3242200 ~ 3253579 (-) True AMCG00011744
AMCG00011745 mRNA downstream 103434 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011747 mRNA downstream 128618 3211724 ~ 3214816 (-) True AMCG00011747
AMCG00011746 mRNA downstream 136080 3203552 ~ 3207354 (-) True AMCG00011746
AMCG00011748 mRNA downstream 141859 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011752 mRNA upstream 2039 3350453 ~ 3357400 (-) True AMCG00011752
AMCG00011753 mRNA upstream 15672 3364086 ~ 3391464 (-) True AMCG00011753
AMCG00011756 mRNA upstream 151226 3499640 ~ 3502460 (-) True AMCG00011756
AMCG00011758 mRNA upstream 166955 3515369 ~ 3520747 (-) True AMCG00011758
AMCG00011757 mRNA upstream 198419 3546833 ~ 3560686 (-) True AMCG00011757
TU165976 other downstream 136080 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 169598 3169708 ~ 3173836 (-) False AMCG00011741
TU166201 other upstream 528632 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 816217 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 870135 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 1126191 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 1126191 4474605 ~ 4476979 (-) False G132693

Expression Profile