RNA id: AMCG00011756


Basic Information

Item Value
RNA id AMCG00011756
length 1521
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00011756
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3499640 ~ 3502460 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTTCATGCTGCTGTTCAGCCGGCAGGGGAAGCTGCGCCTGCAGAAGTGGTACACGGCCACGTCGGAGCGTGACAAGAAGAAGATGGTGCGTGAGCTGATGCAGGTAGTGCTCGCCCGCAAGCCCAAGATGTGCAGCTTTCTGGAGTGGAGGGACCTCAAGATCGTGTGCGAGTTGGACATCATCTTTAACTTCGAGAAGGCCTACTTCATTCTGGATGAGTTCCTGATGGGCGGCGAGATCCAGGACACGTCCAAGAAGAGCGTGCTCAAGGCCATCGAGCAGGCCGACCTGCTGCAGGAGGTGCGTTCACCTTTCGTACTGGCCCTCGACCCACGGGCCCCCTCACACCGGCGGCCCCCCGGCCCTGGTGCTGGAGCACGGATCGGCTGGGTTCTCCTTCCAAACTGACCCATAACTGGACACTGGAGAGCGACAGGGTGTTCTAAATGGTTCTATGGTTCTAAAACGAATAAAAGCTTATACATCTATGGAGTGAATTCCAACACCAGCTGTACCTATTAATTCTACACTTGGCATTAACCTCTTACCCAATTATAGAATCTTACATGCGTCATTTAGCTATATTTCCAAAAGGTAATCGATCATGCTTTCATGCTacgacacacaaacaaattaccTTTTGTAGCTCCTCCATTGATGGCGCTCTTGACGTCTTTATACACTTGACCTACATGTCGAGAGACTGCGGAGCCGGGGTGACGTCACCGACAGGAACGATATTCGTGTCTGATTACCGCTGGACGAGGAGGTGTAGCATTTACATCTCTTACGGCCACTCGTCCCTGTATACGTTTAACATTTTCAGCACGGCTCTGCTACTGCTTTGTCCGCTTCCACAGATGTCCGCTCAAAAacgatttttttcccctgtgttGCTTTATGTGAGACCCCTGTCCCTTCTCAGAAACGCAAGCTTTTGTAACGGGTCTTTTGTCACCTCCTCCATTCTTTTCTAAAATAGTAAACCCCTAACCTTCATGGTGACAGGTGTCTTTGTACTTCATTGGTTAAGTGAATTGGTTTCAAATTCTGACATCTGATATTGATTGGCTTGAAGGATAACCGTGTGACCTACAGTATCGGTGTTCGGTATGTGGcgtttaattacttttaaaagaaaaaatgtcctGTTCCTGCTTTTTACCGGGAGCTTAAATCCCCGTTCTTGCCCGTCttgaaacctttattttttaaaatgtccccATCCTGCCCGGTCCTGTGAGCTTCATACCTGTACTGTCCCATcccacaacatttttaaaaacatttccccaTCCCGTAGTACTCTCTACTGGACACTCAAACGGCTCTTGTTTCTCTTTCTAATTTCCTcttactttttttattctttttcctTAATGtcctatttctctctctcttacaggAAGACGAATCCCCACGAAGCGTGTTGGAAGAAATGGGCTTAGCATAGCGGGGCCGGCGCCGATTCGGAGCCGACCACTGGGCCAGActgagacggagagagagagggat

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0007399 nervous system development biological_process
GO:0006810 transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166033 lncRNA downstream 42168 3441395 ~ 3457472 (-) True G132395
TU166030 lncRNA downstream 67519 3420276 ~ 3432121 (-) True G132392
TU165992 lncRNA downstream 210349 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA downstream 210349 3283821 ~ 3289291 (-) False G132362
TU165979 lncRNA downstream 261727 3236273 ~ 3237913 (-) False AMCG00011745
TU166079 lncRNA upstream 65427 3567887 ~ 3568440 (-) True G132434
TU166134 lncRNA upstream 126302 3628762 ~ 3702912 (-) True G132482
TU166157 lncRNA upstream 251368 3753828 ~ 3785207 (-) True G132504
TU166160 lncRNA upstream 285772 3788232 ~ 3788441 (-) True G132507
TU166162 lncRNA upstream 289759 3792219 ~ 3792505 (-) True G132509
AMCG00011753 mRNA downstream 108176 3364086 ~ 3391464 (-) True AMCG00011753
AMCG00011752 mRNA downstream 142240 3350453 ~ 3357400 (-) True AMCG00011752
AMCG00011751 mRNA downstream 151226 3343434 ~ 3348414 (-) True AMCG00011751
AMCG00011744 mRNA downstream 246061 3242200 ~ 3253579 (-) True AMCG00011744
AMCG00011745 mRNA downstream 259640 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011758 mRNA upstream 12909 3515369 ~ 3520747 (-) True AMCG00011758
AMCG00011757 mRNA upstream 44373 3546833 ~ 3560686 (-) True AMCG00011757
AMCG00011760 mRNA upstream 110392 3612852 ~ 3620728 (-) True AMCG00011760
AMCG00011768 mRNA upstream 294225 3796685 ~ 3800396 (-) True AMCG00011768
AMCG00011766 mRNA upstream 298512 3800972 ~ 3802909 (-) True AMCG00011766
TU165976 other downstream 292286 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 325804 3169708 ~ 3173836 (-) False AMCG00011741
TU166201 other upstream 374586 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 662171 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 716089 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 972145 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 972145 4474605 ~ 4476979 (-) False G132693

Expression Profile