RNA id: AMCG00011762


Basic Information

Item Value
RNA id AMCG00011762
length 4038
RNA type mRNA
GC content 0.62
exon number 33
gene id AMCG00011762
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3855409 ~ 3869281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AtgatctgcgcagacctgcacaGTCCCGCCACTCTCATGGtcggagcagcgcagacctcTGTGCACATGCGCAGTTGTTGCGCCCTTTCCCGCCGAGACCCGGCTGCGTCGTTATCTGGTGCTGTCGCTGTCTCTCTTCCTGAAGCAATGAAGGCCATGAGGGCTGGGCGGCAGACTTCCCTAGGGAGGCGTGGCTCGCCGCTGCAAAACCCCTCCCTCTCAGTCAGGAACCAATCAGGGCTCGACATGTCCTCTCCCAGCTCCAATGGGAGAGCAGTGGCCCTGTACAGCCCCGCCCCTTTTATTACGCTCCAATCCGTGTTGGGGGAGGAGCCAGAGGACGATGGCCGTGATAGCGAGGAGTGGGACGAGCTCTCGGAGTCCAGCAGTGACTTCGAGGCCCAGATGAGCCAGAGTTCCAGGAAGAGGGCGGCGCGCTCCGCGGCAAGGAGTGGACCGGCGGCCAAGCGGCCCCAGCGCAGCACAGCCCAGGGCAGCAGGGCCACTCCCCCTGGGGCGGCCGCCACCAGATCCCCGGCCAACTCGATGGCGCCGGAGCCGGTCACCGCCGGGGTCCTGTACGAGGCTGTGCGCTCTGTCAAGAGCGCCATGAGGGCGGTCATCGATGATTGGCTGGACAGCTACAAGCATGAGAAGGAGGCGGGGCTACTGGAGCTCATCAACTtcgtagtgcagtgcagtgggtGCAAAGGGGTGGTGAGCAGGGAGATGTTCGCCCGCATGCAGAACGCAGAGATCATTAGCTGGTTGACGCGCGAGTTCGACGAGGACTCGGGCAGTTACCCCCTGTCCACCCCCGGGCCGCAGTGGCGGAAGTTCCGGGTTAACCTGTGTGAGTTTGTGCGGTTGCTGGTGCGCAGCTGCCAGCACAGCCTGCTGTACGACGAGTACCTGTTCAACGCGCTGATCTCGCTGCTCACCGGCCTGTCCGACTCGCAGTGGGAGACCAGTCAGCGGCAGTATGGCATTGAGCTGGGCAAGGAGCCATACCGCCAAGCGCCTGCCCGGCTGGAGGAGCTGCGCAGCTCGCACGCCGAGCTTCTGGAGCACCAGGAGGAGCTGAGTGGGATGATGACTGCCATCTTCAGGGGCATCTTTGTGCACCGATACAGCCAGCGCTTCCTCAATGATGGGTACCTCAAATACCTGGGCTGGACGCTGCATGACAAGCAAGGGCCCGTGAGGTTGAAGTGTCTGAAGGCCCTGCAGGGCgaGCGGATGCTGAGCATGGTGCAGGACAAGGAGTGTGATGTTGCCATGGAGGCTGTGCGGCTGGTGGCTCTCCTCCAACAGAACACGGAGGACATGCTGACGGACGAGGACTGTGCCCGTGTGTACCCGCTGATCTACGCCTCCCACAGGGGCCTGGCCTCAGCAGCCGGGGCCTTCCTCTACAACAGGTTGTGCATCGAGGTGGACAGAGAGGGCCGGGAGAGAGAGCTGGTCAGCCGCCGAGTGGCCATCGTCAGGGTCCTGCTGTCCTTCTACATACAGACCGAGCTCCACGAGCACGCCGCCTACCTGGTGGACAGCCTGTGGGACAGCGCCGGAGCCGAGCTGAAGGACTGGGAGATGATGAGTGAGCTGCTGCTGGAGGGACCAGGAGAGaaggACCTGGCAGACGACGAGGAAAGTGCCCTGATCGAGCTGATGGTGTGTGCGCTGAGACAGGCCGCCCAGCACCTGCCTCCTGTGGGCCGGACCAGCGGGAAGAGggtgctgAGTGCAAAGGATAAGAAGACACAGACCCACGACAAGCTGCTGCTGACCAGCCATTTCATCACAGTCCTGCCCCACCTGCTGGCCAAGTACTCGGCGGACAAGGACAAGGTGTCCAGTCTGTTGCAGGTGCCTCTGTACTTCGAGCTTCAGATCTACTGCACCGGCCGGCGGGAGAAGcacCTGGATCTGCTCCTGGCGCAGGTGGCCGGCATCGTGGAGAAGCACACGGACCCAGGCGTGCTGGAGGCGTGTGCGAGTGTGTTCGCGGCGCTGTGCAGTGAGCGCTACACCTTCGCAGGCCGCGCCGACGTGGCCCTCGGTCGGCTGATGGAGGGGCTGACTGACTGCTTCAGCCCCGCCCTGGAGGACCTGCTGCAGggcacTATGGATGATGTGGAGATGTACAATGCAGCCGCCACTCTGAAGAGGATCGCCGCCCTGTACAATGCGAAGGACCTGACGCAGTGGGACATGTTCAAGCCCTGCTACCAACTTCTGAAGAGTGGAGTGGAGAGCGGCGAGCTGGACAAGGAGATCATGGTCCCCGCGCTGCGCTGTGCCTTCCTGCACGTGCTGTGGGAGCTGACAAGGGCCGTCACTTCGGAGCCCACCCGGGCGCAGGTCAGCCAGCTGCGGCAGCATTTGAGGGCCCTGTGCACCGCGGGTCAGAGCTGCCTGTCTGCAGCCCGGGAGATCAGAGACGAGgCGTTCCTGCTGCTGTGTGACCTGCTCCTGCTCTGCAacgAAGACGAGGAGGCGCAGGTGCAGCGCATCGAGGCTCTCCATCGGCGCCGGGTGCAGCTGGCCGGGTTCTGCAAGCTGATCGTGTTCAGCGTGCTGGAGCTCAGCGCCGCCACCGACGTCTTCAAGCACTACCACAAGTTCTATAACGACTATGGCGACATCATCAGAGAGACGCTCAGCAAGGCCAGGGCCATCAGCCGGGTGCAGAGCGCCAGGACCGTGTGTCTGAGCCTGCAGCAGgtgttctcagagctgctgcaggagcaGGGCTCCCCTCTGGACACCTCCAGCCCGCAGTTCTGTGAGATCAGAGATCTGGCGCGCCGGCTGGCCATGACCTTCGGCATCGACCTGCACCTGGCCAGAGAGCCGCTGGTCACCCTGCACAAGGACGGGATCCGCTTTGCCCTGCGGGACCCCGGGGCCCCTGGCCAGCCACCCCCACAGCTGCCCTTCCTGGAGGTCCTGAGTGAGTTCAGCTTCAAGCTCATCAAACAGGACCGGGCCCTGCTTGCTGGGTTCCTGCAGCGTGTGGCCCCCTCGCCCCTGCCCTCCTGGACGGCCCTGGCTGTGTACCAGCGCTCCCTGCAGAGCGGCCCCAGGGACAGGGCCGCCTTGGACCGGACCTCCAGCAGCGCTGGGGCCACACACACGCCCGCCGCCAAGCGCAGGAGGGCAGCCAAGCAGgcCACCAGCTCTAGTCCTGCCGCAGGCGTGTGGCTTGAGCGCAGCAGCAACCTCTCCAACAAGCTGCCAACCCCCAGCCTCGCCTCCACCGCGCTGAGAGCGCCCAGGGGCGCCCTGCCCAGCCCCCAGCGCTCCCCTGACCCCAGCGCGGACCTGGACTCCCAGCTGTACCTGCTCAGTCTGATCGAAGAGGATGAGGACGCCGCCCCCGAGGAGGCCGAGATCGAGGACTTCGAGAGCAGCGTGGAGTCGGAGGATGGCACACCGGCTGAGCGCCTGCCCTCCACACGGCACCAGCGGCACGGGGGGCTCCTGCAGGACCTCTTCGACTGAGTCCCCCGGACCCCAGGAACCCGAGGAAGGGCGATGACAGCCAGAGACCTGTTCGGCCGCTGGGGACCAGAGCGTGGCCCTGAACCGGGGACGCCCCTCCACTGCGCAGCTCGGTCGAGTCCCAGCCTGTGTCTACTGGGGTACAAACTGCTCCTTAACGTTATAATGGACATGGCCGTCTGTGTGGATGTGTTGACAGACTGGTTGTGGGCTGGAGTGGCCACTGTTGGCCCCTGTGGTTATTATAGGAGTGTGAGAGCGAGAGTGTTACATGTCACGTGTTCTAGATGTTCATTTCATACTGCTGATACTATAACGGCAAAGTTGTTTTCAGGATTCTTGTGATTTGAGTTTGTTATCCTTGTTTGTTCCGACattcaatgtaaaatgtttgagagagagagcagttgtGTTGGCttagtttttatataaatatctaaTCCAGTGGTAAAagtttgtttattggttttgtcagattgtttttgttgattcTGATGTTGTGAACATCAATTAAATGCTTATTTTGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166175 lncRNA upstream 13935 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 33096 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 62908 3792229 ~ 3792501 (+) True G132508
TU166159 lncRNA upstream 66969 3788227 ~ 3788440 (+) True G132506
TU166132 lncRNA upstream 70213 3753947 ~ 3785196 (+) True G132480
TU166215 lncRNA downstream 27273 3896554 ~ 3897596 (+) True AMCG00011770
TU166220 lncRNA downstream 34394 3903675 ~ 3977662 (+) False AMCG00011771
TU166241 lncRNA downstream 121146 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA downstream 122983 3992264 ~ 3992904 (+) True G132574
TU166255 lncRNA downstream 146846 4016127 ~ 4017756 (+) True G132586
AMCG00011759 mRNA upstream 187860 3661364 ~ 3667549 (+) True AMCG00011759
AMCG00011755 mRNA upstream 363854 3484762 ~ 3491555 (+) True AMCG00011755
AMCG00011754 mRNA upstream 406575 3448466 ~ 3448834 (+) True AMCG00011754
AMCG00011750 mRNA upstream 407562 3440089 ~ 3447847 (+) True AMCG00011750
AMCG00011749 mRNA upstream 443265 3409473 ~ 3412144 (+) True AMCG00011749
AMCG00011761 mRNA downstream 13344 3882625 ~ 3889058 (+) True AMCG00011761
AMCG00011770 mRNA downstream 24431 3893712 ~ 3896735 (+) False AMCG00011770
AMCG00011769 mRNA downstream 42619 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011774 mRNA downstream 50388 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011771 mRNA downstream 61354 3930635 ~ 3942899 (+) True AMCG00011771
TU165868 other upstream 650812 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 850747 3001432 ~ 3004662 (+) True G132221
TU165616 other upstream 914238 2938370 ~ 2941171 (+) True G132072
TU165599 other upstream 975149 2877274 ~ 2880260 (+) True G132058
TU165585 other upstream 997125 2852870 ~ 2858284 (+) True AMCG00011718
TU166214 other downstream 23100 3892381 ~ 3896179 (+) False AMCG00011770
TU166218 other downstream 34394 3903675 ~ 3938392 (+) False AMCG00011771
TU166232 other downstream 72652 3941933 ~ 3943362 (+) False AMCG00011771
TU166792 other downstream 1890577 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1959520 5828801 ~ 5829532 (+) True G133059

Expression Profile