RNA id: AMCG00011765


Basic Information

Item Value
RNA id AMCG00011765
length 924
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00011765
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3869832 ~ 3879185 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCTCGCAGGTGTTCATCCTCTCGTCCAAGGGCGACCACCTCATTTACAAAGACTGTATCCTTTCACCCCGGCCAGTCCTCTCCCTGCTCGCAGCTCTGATTAAGGATTACTGCGGCTGCCTGTCAGAGAAGTCGGTCCGGATGAACTTCGCCCTCATATACGAGCTGCTGGACGAGATGGTGGACTACGGCTACGTCCAGACCTCCTCCACCGACATCCTGAAGAACTTCATCCAGACCGAGGCCGTCAGCGCCAAGCCCTTCAGCCTGTTCGACCCCAGCAACGTGGGCCTGGGGCTGCTGATGAAGGCAGACATCCAGGGGGAGATCCGGGTCAAGTGCTACCTGCCCAGCTGCTCAGagATGCGGATCGGTCTCAATGAGGAGTTCAGTATAGGGAGGGCCCAGCTGCGCGgcTACGGAGCTGCAGTGCGGGTGGATGAGTGCAGTTTCCACGAGTCGGTCCGGCTGGACGAGTTCGACAGCCACCGCATCCTGAGACTGACGCCCAGCCAGGGAGAGCAAACTGTGATGCAGTACCAGCTGTGCGACGACCTGCCCTCCTCCCCGCCCTTCCGACTCTTCCCCACGCTGGAGAGGGACCGCAGCGGCAGCCCGGCTCTCAACGTGGTGGCCACTATACCCGTCCCCAAGGGCTCCCTGAGTCTGTCCCAGGAGCTCAGCAGTCCGGACCAGAGTGCCGAGCTGCAGCCCAGCAGCAAGACTGTGctgGAGGTGCCGGGCCTGAGCTCGGCATCGTTGCTGGAGGTGGGTCCGGTCAGCCTGTCCTTCGAGCTGCCCAAGCACACCGTCACGGGCCTGCAGATCCGCTTCCTGCGCCTGTCCCCCGGGCCGCCCTCGCTGCCCCAGCGCTGGGTCCGCTACGTCACGCACTCCGACTCCTACACCCTCCGCATGTAG

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166187 lncRNA downstream 28361 3841232 ~ 3841471 (-) True G132530
TU166180 lncRNA downstream 70546 3798871 ~ 3799286 (-) True G132523
TU166162 lncRNA downstream 77327 3792219 ~ 3792505 (-) True G132509
TU166160 lncRNA downstream 81391 3788232 ~ 3788441 (-) True G132507
TU166157 lncRNA downstream 84625 3753828 ~ 3785207 (-) True G132504
TU166284 lncRNA upstream 50284 3927393 ~ 3931087 (-) True G132609
TU166289 lncRNA upstream 62799 3939908 ~ 3940568 (-) False AMCG00011775
TU166297 lncRNA upstream 91381 3968490 ~ 4098884 (-) False G132621
TU166298 lncRNA upstream 91381 3968490 ~ 4033837 (-) True G132621
TU166313 lncRNA upstream 201340 4078449 ~ 4090202 (-) True G132633
AMCG00011763 mRNA downstream 17445 3846475 ~ 3852387 (-) True AMCG00011763
AMCG00011767 mRNA downstream 23636 3841671 ~ 3846196 (-) True AMCG00011767
AMCG00011764 mRNA downstream 49755 3811526 ~ 3820077 (-) True AMCG00011764
AMCG00011766 mRNA downstream 66923 3800972 ~ 3802909 (-) True AMCG00011766
AMCG00011768 mRNA downstream 69436 3796685 ~ 3800396 (-) True AMCG00011768
AMCG00011772 mRNA upstream 27020 3904129 ~ 3910972 (-) True AMCG00011772
AMCG00011775 mRNA upstream 60375 3937484 ~ 3944519 (-) True AMCG00011775
AMCG00011773 mRNA upstream 88138 3965247 ~ 3970526 (-) True AMCG00011773
AMCG00011779 mRNA upstream 118186 3995295 ~ 4004666 (-) True AMCG00011779
AMCG00011778 mRNA upstream 130848 4007957 ~ 4013855 (-) True AMCG00011778
TU165976 other downstream 662478 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 695996 3169708 ~ 3173836 (-) False AMCG00011741
TU166322 other upstream 287522 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 341440 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 597496 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 597496 4474605 ~ 4476979 (-) False G132693
TU166389 other upstream 606157 4483266 ~ 4492313 (-) False AMCG00011792

Expression Profile