RNA id: TU166201


Basic Information

Item Value
RNA id TU166201
length 1072
RNA type TUCP
GC content 0.47
exon number 2
gene id AMCG00011765
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3869832 ~ 3879185 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGTCACCGCCTCTGGCGCGAAAACACAGCGTTGAAAACAATCCTGGAAAGGGACGGGGGAGGGGTGctcagaaatataaaatatatatacaatataatagtGTGATATTGCAGTGGAATATCACACACAGTCGGCGGGGTTTACACACCTCTATATAGTTAGTGAAATAGTGTGCATTTATAAGGGAAGTCAGAGTGTCGTGTAGGTATTAAGTGACGGATAACCCCCCTCTGAATACATGAGGAAGAACTGATAATGGACTCGTCCGGCTCCCCCGCAGAGCCATTTGGCGCGAAAGTGCTGCTGTTTTCTTGGCATGAGAAGCTAGACTGGCACctgtaaataaactgaagattttCTTTACCACTTAACTGGATAAGTACATCTATAATCAAATGccaaataaaacacttttttttctgtcacgCTTATCAAAGTTaccataaataaacagataaacgaCTGAAAAGCATACATCTCTCGTGCATcctaaacatgtacatttttaaaatcactaGTTATACGGGCAGTTAACCGAGAGCTCTACACCGGCTATTTTAATGCACAACAATTAGTGCATTTGTGcgacaaatataaataaactgttgtCTCTCTCTGAGCTCGACCGAAATAAAGTCACTAATCATACCGAAGATATGAATGGCATATGAAACATTGGtttccacagatctgcagaatcccagctatctcattggtggagccgcgcagacctgcggaagTCTGCGCAACACGAACGCCCCTAGCTTATGGGCGACATAGCAGAGACTGCGCATGTCAGAAATCGTGTTTTGACGTGGGACGGCCCACTGCTGTGATTGGTCAGTCACGGACCAATCAGAACGCGGGAAAGCAGGCTCCGCATCCCCTCTCCGCACACCGAGGCAGTGCAGCTCCTTACCCGAGCAAACTGAAGCCTCCTGCGGCTCACCGCGCTCACTCGACAGCCGGGGATCGGGTCGCGGCCTTCCCGGGTTCCAgCAGCGGCATGATCTCGCAGGTGTTCATCCTCTCGTCCAAGGGCGACCACCTCATTTACAAAGACTGTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166187 lncRNA downstream 35575 3841232 ~ 3841471 (-) True G132530
TU166180 lncRNA downstream 77760 3798871 ~ 3799286 (-) True G132523
TU166162 lncRNA downstream 84541 3792219 ~ 3792505 (-) True G132509
TU166160 lncRNA downstream 88605 3788232 ~ 3788441 (-) True G132507
TU166157 lncRNA downstream 91839 3753828 ~ 3785207 (-) True G132504
TU166284 lncRNA upstream 48996 3927393 ~ 3931087 (-) True G132609
TU166289 lncRNA upstream 61511 3939908 ~ 3940568 (-) False AMCG00011775
TU166297 lncRNA upstream 90093 3968490 ~ 4098884 (-) False G132621
TU166298 lncRNA upstream 90093 3968490 ~ 4033837 (-) True G132621
TU166313 lncRNA upstream 200052 4078449 ~ 4090202 (-) True G132633
AMCG00011763 mRNA downstream 24659 3846475 ~ 3852387 (-) True AMCG00011763
AMCG00011767 mRNA downstream 30850 3841671 ~ 3846196 (-) True AMCG00011767
AMCG00011764 mRNA downstream 56969 3811526 ~ 3820077 (-) True AMCG00011764
AMCG00011766 mRNA downstream 74137 3800972 ~ 3802909 (-) True AMCG00011766
AMCG00011768 mRNA downstream 76650 3796685 ~ 3800396 (-) True AMCG00011768
AMCG00011772 mRNA upstream 25732 3904129 ~ 3910972 (-) True AMCG00011772
AMCG00011775 mRNA upstream 59087 3937484 ~ 3944519 (-) True AMCG00011775
AMCG00011773 mRNA upstream 86850 3965247 ~ 3970526 (-) True AMCG00011773
AMCG00011779 mRNA upstream 116898 3995295 ~ 4004666 (-) True AMCG00011779
AMCG00011778 mRNA upstream 129560 4007957 ~ 4013855 (-) True AMCG00011778
TU165976 other downstream 669692 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 703210 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other downstream 703210 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other downstream 703210 3169761 ~ 3173836 (-) False AMCG00011741
TU165965 other downstream 703210 3169761 ~ 3173836 (-) False AMCG00011741
TU166322 other upstream 286234 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 340152 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 596208 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 596208 4474605 ~ 4476979 (-) False G132693
TU166389 other upstream 604869 4483266 ~ 4492313 (-) False AMCG00011792

Expression Profile