RNA id: AMCG00011770



Basic Information


Item Value
RNA id AMCG00011770
length 693
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00011770
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3892381 ~ 3897596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATTCCTCAGATATTCCTGGTGGGGGCGCTGTGCTGCGTCACGCTGCTCCCAGGCTTGCTGGAAGCCACTTCGCTGATGAAGTTAATTAAGCCAGAAGcGTCCGAGCCCCAGACGGCCAGCGCTGTGCAGATCAGCCGGTCCGAGGCCAGCGGGTTCCTCGCGGCCCCCTCGCGGCCCAAGCGCAACGCGGGCAAGTGGCACCGCAGCTCCCCAGACTTCCAGGCCTACTACAAATACTACAACAGCATCGGCCACACGGAGGGGatctaCGAGATCGACCGCATCCGCATGCTGTACCAGCAGATGCGCCACCTGGAGCAGGTGCACGGCGCCGACGCCCCCTACTACCAGTACACCCTGGGCATGGCGCCCCCCAAGTGCGACCCCAGCAAGGACAAGGGCTGCCAGCCTGGCCCCCCGCCGCCGCCCCCCAGCACCCCCCCGCCGCCCCCGGCCCCCCAGCAGCAGACCCTGATCCGCTACCTGTGCGACCCCCACGAGCATAGCTGCCAGCCCCACATCgaggaagaggaggaggaggaggaagagacgGTGGAGCCCGTGCCCCCCGAGCCCCTCAAGAAAGGCAAGAAGCCCCCCGCTTACCCCTACTACGTCCACGGCCAGTACTACGGCTACGACCCCTACGACCCCTACAGCTACGTCTACCGCCAGCCCAACAACCAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166175 lncRNA upstream 52238 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 71399 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 101211 3792229 ~ 3792501 (+) True G132508
TU166159 lncRNA upstream 105272 3788227 ~ 3788440 (+) True G132506
TU166132 lncRNA upstream 108516 3753947 ~ 3785196 (+) True G132480
TU166220 lncRNA downstream 6940 3903675 ~ 3977662 (+) False AMCG00011771
TU166241 lncRNA downstream 93692 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA downstream 95529 3992264 ~ 3992904 (+) True G132574
TU166255 lncRNA downstream 119392 4016127 ~ 4017756 (+) True G132586
TU166266 lncRNA downstream 212778 4109513 ~ 4111930 (+) True G132596
AMCG00011761 mRNA upstream 4654 3882625 ~ 3889058 (+) True AMCG00011761
AMCG00011762 mRNA upstream 24431 3855409 ~ 3869281 (+) True AMCG00011762
AMCG00011759 mRNA upstream 226163 3661364 ~ 3667549 (+) True AMCG00011759
AMCG00011755 mRNA upstream 402157 3484762 ~ 3491555 (+) True AMCG00011755
AMCG00011754 mRNA upstream 444878 3448466 ~ 3448834 (+) True AMCG00011754
AMCG00011769 mRNA downstream 15165 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011774 mRNA downstream 22934 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011771 mRNA downstream 33900 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011776 mRNA downstream 50667 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011777 mRNA downstream 73585 3970320 ~ 3975139 (+) True AMCG00011777
TU165868 other upstream 689115 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 889050 3001432 ~ 3004662 (+) True G132221
TU165616 other upstream 952541 2938370 ~ 2941171 (+) True G132072
TU165599 other upstream 1013452 2877274 ~ 2880260 (+) True G132058
TU165585 other upstream 1035428 2852870 ~ 2858284 (+) True AMCG00011718
TU166218 other downstream 6940 3903675 ~ 3938392 (+) False AMCG00011771
TU166232 other downstream 45198 3941933 ~ 3943362 (+) False AMCG00011771
TU166792 other downstream 1863123 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1932066 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1990270 5887005 ~ 5887892 (+) False AMCG00011837

Expression Profile