RNA id: TU166289


Basic Information

Item Value
RNA id TU166289
length 241
lncRNA type sense_over
GC content 0.59
exon number 2
gene id AMCG00011775
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3937484 ~ 3944519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTGGGTCGTGCGCAGGTTCGTGGCCGGGCTGCTGCAGGTCTATTACCTCAGTGATCTGGCTGTCCAGCAGGACTCGGAGCTGCAGGCCTGGATACTGGAGATCTTCACGCAAGGCTTCCTGGGACGGCCGGAGTCAGGTGTGCCCCAGTCGTTCCAGAACAGAAAGGAGCTGGCGAAGTTCATTACCATGGTTATCTTCAGCTGTTCGGCGCTCCATTCGGCTGTCAACTTctcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166284 lncRNA downstream 8821 3927393 ~ 3931087 (-) True G132609
TU166202 lncRNA downstream 60723 3877046 ~ 3879185 (-) False AMCG00011765
TU166187 lncRNA downstream 98437 3841232 ~ 3841471 (-) True G132530
TU166180 lncRNA downstream 140622 3798871 ~ 3799286 (-) True G132523
TU166162 lncRNA downstream 147403 3792219 ~ 3792505 (-) True G132509
TU166297 lncRNA upstream 27922 3968490 ~ 4098884 (-) False G132621
TU166298 lncRNA upstream 27922 3968490 ~ 4033837 (-) True G132621
TU166313 lncRNA upstream 137881 4078449 ~ 4090202 (-) True G132633
TU166352 lncRNA upstream 282132 4222700 ~ 4222974 (-) True G132668
TU166353 lncRNA upstream 291908 4232476 ~ 4236299 (-) True G132669
AMCG00011772 mRNA downstream 28936 3904129 ~ 3910972 (-) True AMCG00011772
AMCG00011765 mRNA downstream 62799 3869832 ~ 3877109 (-) False AMCG00011765
AMCG00011763 mRNA downstream 87521 3846475 ~ 3852387 (-) True AMCG00011763
AMCG00011767 mRNA downstream 93712 3841671 ~ 3846196 (-) True AMCG00011767
AMCG00011764 mRNA downstream 119831 3811526 ~ 3820077 (-) True AMCG00011764
AMCG00011773 mRNA upstream 24679 3965247 ~ 3970526 (-) True AMCG00011773
AMCG00011779 mRNA upstream 54727 3995295 ~ 4004666 (-) True AMCG00011779
AMCG00011778 mRNA upstream 67389 4007957 ~ 4013855 (-) True AMCG00011778
AMCG00011780 mRNA upstream 128544 4069112 ~ 4070390 (-) True AMCG00011780
AMCG00011784 mRNA upstream 205082 4145650 ~ 4148931 (-) True AMCG00011784
TU166201 other downstream 61511 3877046 ~ 3878397 (-) True AMCG00011765
TU165976 other downstream 732554 3201370 ~ 3207354 (-) True G132352
TU165963 other downstream 766072 3169761 ~ 3173836 (-) True AMCG00011741
TU166322 other upstream 224063 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 277981 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 534037 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 534037 4474605 ~ 4476979 (-) False G132693
TU166389 other upstream 542698 4483266 ~ 4492313 (-) False AMCG00011792

Expression Profile