RNA id: AMCG00011776


Basic Information

Item Value
RNA id AMCG00011776
length 3888
RNA type mRNA
GC content 0.62
exon number 27
gene id AMCG00011776
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3947402 ~ 3965183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCAGTACATGCTGCTGGATTCCTCCTTCAGTGTCCCAGGAGCCAAGGCAGAGCTGAGGAGCCCTGTGGTGCGCTCTAAAGGCTGCCTCCAGCTCTCTTTTTACTACTACATGTATGGCACCTCCAGCACTATGGTGATCAATGCCTACGCCACCACTCCCGACGGCACCCTCGGAAGACCCTTGTTCACTCTGACAGGCAACCAGGGGCAGGGCTGGAAGAAGGCGGAGCTCCGTTACATGGGGACAAAAGACATCCAGTTTGTGATCCAGGGAGTCTATGGAGAGACGGACAAGACAGACTTAGCGGTGGACAGTGTCTGCATCACACACTGTTCAGTGCAATGTCCTCCTAACTCACACTATGAGGTGTGCGGACGCCCCTGCCTGCCCTCCTGCCAGGCCCCCTCCACCAACTGCACCGGCTCCTGCATCACCGGCTGCCACTGCGACCCTGGCTATGTGTACCACGGGCGCCACTGCGTGCCCGTCCACCAGTGCGGCTGCCTGGACCAACACCACAACTACTATGAGGGTTGCTCGGAGATGTGCCGATGCCTGGGCAACTACAGCACAGAGTGCGTCAGTAACCAGTGCACAGCCACCGAGGAGTGTCGCTATGTCAACGGGGTGCCTGGCTGCTATCCCAAAGACTCCTCCACCTGCATCGTGTCCGGTGACCCTCACTACACCACCTTTGACCGCCGCCACTATAACTTCATGGGCAACTGCAGCTACCTGCTCACGCAGCCCTGCAACAGCAGCCGGCTCCCAGCATTCTCTGTGTTCGCTGACAACGAGCACCGCTTCGGCCAGATGAGCGTCACTTACGTCAAGGCCGTCCACGTCCACCTCCCCGTGCAGAACCTCGTCATCTCGGTGCTCAAGGGAGGGACAGTGAGGgTGAACGGGTCAAAGGTGAACCTGCCCGCCAGCCCCGCCCCCGGAGTaaATGAGTATGAAGGACAGACAGACGTTGACTACCCCAAGGACAGCAcgGTCCTGACTTCCTGTGACTTCAATGATGACGCTTCCCCGTTCTGTGACTTCCGGCAGGGGGGCGGCGACCACAGTGATTGGATACGGCACCGTGGCCCCACCCCCACCGATGGGACCGGTCCCAGTGGAGACTACCCCAGCGGCGatgGCTACTACATCTACCTGGAGGCCGACAACGTGGCCAATGGCCAGGGGGCTCAGTTTCTCAGCCCGGTTCTGCTGGCACCAGGCAGCGATCTGTGCGTGCAGTTCTGGTTCTACATGTACGGGCTGGACTCCCAGAACAGCCTAGCGGTGCTGGTGCAGCGGCCAGGGGGGGAGCAGGAGCGCCTGTGGGAGGAGATGGGCGCCCAGAGCCACTCCTGGCTGGCCAGTGCAtttattttcaaaagcatctCAATATCCCTGTCACACATTCATATAGATCAGTGTTTGTGCCGCACTGTGTCTTCTGCCACTTATAGACTTCCtctcccctccatctctctctctctcagcacctACTCTGGCCAGATGTGCGGACTGTGTGGCAACTATGACAAGGACCCTGGCAACGACTTCACTCGCCCCAATGGCAGCCAGGCGGGGGGATCAGACGACTTCGGGAACAGCTGGCAGACGCCGGAAGACGAGGATGAATCGTGTCACCCTGACAACGGGACAGTCCCCCCCTGTGATAAAGACATGGAGGCCGAGGTGTCCAAACCAGAGAACTGTGgcagactgactgactcacaCGGGCCATTCAGCAGCCACTACTCCCCCTGTGGCACGGCCTGCCCTGCCAGCTGCACTGACCCCAGCGCCCCCAGCCAGTGCCCGCTGCCCTGTGtggagggctgtgtgtgtgatgccGGGCTGGTCCTCAGTGGGGACAAGTGTGTGCCCATCAGCCAGTGTGGCTGTGTGGACAAGGACAACAACTACCATCCGGTGGGAGAGAGCTGGTTCCCGGGGCCAGGCTGCTCTGAGCGCTGTCACTGCGCCGCCTCCAATAACATCAGCTGTGAGGCCTGGCACGTGCTGCACACCTTCATGGGCACCTGCACCTACACCCTGGTCACCGTCTGCAACTCCAGCCTGCTGCCCGCCTTCACCATCACCGCCAAGAACGAGGAGCGGGGCCAGCCCCAGGCCTCCTACCTGCGCTCCGTCACTGTGGCCCTGCCCGGGGCCACCGTCACCCTGGCCAAGAGCGGGAGAGTGCTGctggaCGGGCGCAGGGTGCGGACCCCTCTGTCCATCACTGGCACGGGGGCGTCTCTATCCAGCAGTGGGGTGTACAATGTGCTGAACACGGACTTTGGGCTGACGGTGTGTGGCATGTGCGGCAACTTCAACGGCAACGACAATGATGACAACCTGATGCCCAACCGGCTGCCGGCCAAGGACTCTGCACAGCTGGGCAACAGCTGGAAGGCCGAGGGTGACACGGACTTAGGCTGTGAGCCGGACGACAGGGAGGACCTGGACCCAAAGTGCACCCCGGGGGAGGAGTCCCGTTACTCCACCCTCTGTGCCGAGCTGCTGTTGGACGCCCGCTTCGGCCCCTGCCACGCCCTCCTGCCGCCCGGCCCCTTCCTGCACAGCTGCCTGTTTGACCTGTGCGAGTACCAGGGCATGCTGGGAAGGCTGGACTGTATCGCGGTGGTGGATCCCAGGCCCTATTTCCTGAACTGCGTCTATGACATGTGCCGCTACGAGGGGCTCCAGCAGTCGCTGTGTGATCAGCTGCAGGCCTACACGGACGCCTGCCAGGCTGCAGGGGCACCAGTGCACCAGTGGAGGGCACCAGACTTTTGCCcccTCACCTGCCCCCCTAACAGTCACTACAGCCTGTGTGCCAGCGTGTGCCCAGAGAGCTGTGTGGCCCCCTCTCTGCCTGGGGGATGCCAGCCGGGCTGTGTAGAGGGGTGCCAGTGTGATCGTGGCTTCGTGCAGAGTGACGAGCAGTGTGTGGCCCTGAGAGACTGCGGCTGCCTTGACCCCCAAGGCTCCTACCACCCTGTGAATGAGAGCTGGTACCTGCCAGGCTGTGgtcagcactgtgtgtgtcagggggaGGGGGTGATCCGCTGCCAGAACACCAGCTGCTTACTCACTGAGAGCTGCCAGCTGCAGGATGGAgagtatggctgccaagggctGGactCGGCCACATGTTCGGCCACAGGGGATCCTCACTACACCTCCTACGATGGCAGAGTGCACCACTTCCAGGGCGCCTGCACCTACACCCTCTCCAAGGCCTGCAATGTCTCCTCCGGCTTGCCGTACTTCTCTGTGGAGACAGAGAACGAGCACCGCGGCAACAGCAAGACAGTGTCGTACGTCAGGGCGGTCCGGGTTAACGTTTACCAGCGAGCCATCATCCTGGGCAAAGGACGTCAagtgcagGTGGACGGGAGGCGGGTCACCCTCCCGGTGTTTCCGGCGCAGGGGCTGACCGTGCGTCTGAGCGGGGTCTTCGCGGCCGTGGAGACGGATTTCGGGCTCCACGTGCGTTTTGACGGCAACCACCATGCTGATGTCAGGGTGCCGTCCTCCTACAGTGGCCGGCTCTGCGGATTGTGCGGTGAGGCCCCGTCCGACGGGAGCACGAATTCGGGTTGCAACTATAACAGCCAGCCTGGCGACGACAACCTGAAACCCGACGGGAAACCAGCGGTTAGCACCCCCGAGCTGGGCGAGAGCTGGCAGGTCCCGGACAACCGCACAGAatgctcCCATGATGGAGGGGTGGACTCATGCGACAAGACAGTGGAGAGTGATGCCCAGAAGCCCACCAGCTGTGGCATGATCACAGACCCCCAGGGTGTGTTCCAGCCCTGCCACTCGGTGGTGCCCCCCAGTGTCTACTTTGAGAACTGCGTGCTGGGGTGCCCATAG

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166215 lncRNA upstream 49806 3896554 ~ 3897596 (+) True AMCG00011770
TU166175 lncRNA upstream 105928 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 125089 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 154901 3792229 ~ 3792501 (+) True G132508
TU166159 lncRNA upstream 158962 3788227 ~ 3788440 (+) True G132506
TU166241 lncRNA downstream 25244 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA downstream 27081 3992264 ~ 3992904 (+) True G132574
TU166255 lncRNA downstream 50944 4016127 ~ 4017756 (+) True G132586
TU166266 lncRNA downstream 144330 4109513 ~ 4111930 (+) True G132596
TU166337 lncRNA downstream 253364 4218547 ~ 4218983 (+) True G132655
AMCG00011771 mRNA upstream 4503 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011774 mRNA upstream 24776 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011769 mRNA upstream 32500 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011770 mRNA upstream 50667 3893712 ~ 3896735 (+) False AMCG00011770
AMCG00011761 mRNA upstream 58344 3882625 ~ 3889058 (+) True AMCG00011761
AMCG00011777 mRNA downstream 5137 3970320 ~ 3975139 (+) True AMCG00011777
AMCG00011782 mRNA downstream 199650 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011781 mRNA downstream 210252 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011785 mRNA downstream 277989 4243172 ~ 4249417 (+) True AMCG00011785
AMCG00011793 mRNA downstream 628777 4593960 ~ 4601353 (+) True AMCG00011793
TU166232 other upstream 4040 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 9010 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 51223 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 742805 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 942740 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 1794675 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1863618 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1921822 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1921822 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 2290767 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile