RNA id: AMCG00011777



Basic Information


Item Value
RNA id AMCG00011777
length 666
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00011777
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3970320 ~ 3975139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTACTCTCCAGTGTCATCCACGCAGCCGCAGCTGGACTGGGGGACGCACTGTCCGTCACTGAGCACGAAGCCCCTGTCACAGCGGCAGCCCTCCACGCAGGCGCTGGGCGGCTGGGCACAGCTGGACTCAGCAAACAGGTTGGCACAGGTGGAAGGGCAAGGCGGGGTGCAGGGGGAGTAGTGGCTGTTGGGAGGGCAGGGCAGAGCTgcgggCAGTGTCTGTGCACAGCGACGGGCTTTGTGTGCCATGCAAACAGCTGCCCAGAGGGACACGTGTGTTCTGTGTTCAACTACACGCGTGACTGCTACAAAGCCAGCGCATGTCTGAGCTACCCCTGTCTGAACGGCGGGTCGTGCCAGGAGACAGCAGGGGGCTCCAACTTCACCTGCAACTGCGCCGAGGGGTACGAGGGGGCGCTGTGCGAGGTGGAGAAGACCACCCAAGAGGACGACCGGCTGGatgaGACGACCATCATCCTGATCGGAGTGCTGGTGCCGCTGGCCGTGATCGTGCTGGCGGtgACTGCAGTTCTATCTTGTGTCTTCTTTGGACTTGTTTACGTCACTGACGCATTTCAGTGCCACGCCCCCAAATCATGCAACATCCCATCAGCAATACAACTGTCAGTTAATGACTCTATAAAATCGGGCAGCACCTTATAA

Function


GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166215 lncRNA upstream 72724 3896554 ~ 3897596 (+) True AMCG00011770
TU166175 lncRNA upstream 128846 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 148007 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 177819 3792229 ~ 3792501 (+) True G132508
TU166159 lncRNA upstream 181880 3788227 ~ 3788440 (+) True G132506
TU166241 lncRNA downstream 15288 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA downstream 17125 3992264 ~ 3992904 (+) True G132574
TU166255 lncRNA downstream 40988 4016127 ~ 4017756 (+) True G132586
TU166266 lncRNA downstream 134374 4109513 ~ 4111930 (+) True G132596
TU166337 lncRNA downstream 243408 4218547 ~ 4218983 (+) True G132655
AMCG00011776 mRNA upstream 5137 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011771 mRNA upstream 27421 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011774 mRNA upstream 47694 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011769 mRNA upstream 55418 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011770 mRNA upstream 73585 3893712 ~ 3896735 (+) False AMCG00011770
AMCG00011782 mRNA downstream 189694 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011781 mRNA downstream 200296 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011785 mRNA downstream 268033 4243172 ~ 4249417 (+) True AMCG00011785
AMCG00011793 mRNA downstream 618821 4593960 ~ 4601353 (+) True AMCG00011793
AMCG00011794 mRNA downstream 671171 4646310 ~ 4648415 (+) True AMCG00011794
TU166232 other upstream 26958 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 31928 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 74141 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 765723 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 965658 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 1784719 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1853662 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1911866 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1911866 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 2280811 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile