RNA id: AMCG00011779


Basic Information

Item Value
RNA id AMCG00011779
length 2096
RNA type mRNA
GC content 0.63
exon number 11
gene id AMCG00011779
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3995295 ~ 4004666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGAGGCGGGCTGCGCTGCTCCGTGATGCGGGGGGCGAGAAGACCGATCAACCGGGGacgttattttaattttaacagttttatataaaaaggCAGTAATCATGGTTCTGATGATGGAGTCCCAGTGCGAGTATTTCATGTATTTCCCCGCAGTGCCCATTTCGGACCTGTCGGACCCGGCGCGGTACCGCTCTCTCCCCCGCAGGAGCCACCTCTACCTCGGCGAGACCGTGCGCTTCCTGCTGGTGCTGCGGTGCCGAGACGGGGGGaccggcggcggcggcggcggcggcgggggTGGAGGTGCTGGAGGCGGCGTGGGAGGCTCCGGGACGGACCCCCCCAGCAGCCGGGCTTGGCAGGAGCTGGCCGGCTCTCTGTGCGCGGTGGCCAGCGTGAGCCCAGGCGAGAGCCGACCGCGGCCCCAGCCCCACCACGACTACCACAGCAGCGGGGACGAGGGGGCAGCGGAGGCCGAGGACGAGGGGGCAGCGCCGGGGAGAGCGGACGCCCGTAGCCGGGGCTTCCGAGAGTGCAAGCCGCTGCTCATCCACAACAACAACGGCAGCGGCGGGAGGGAGTACCGGCGGGCGCCAGTGCAGTCTCCCCTGGACGAGCCGGTGGTCCTCAGCGATGAGGTCATCTTCCCCCTTACGGTGTCCCTGGACAAGCTGCCGGTCAACACGCTCAAGGTCAAGgtgATAGTGACGGTGTGGAAGCGCGACGTGGAGAAGGCCGAGGTTCGGGAGCACGGCTACCTCACCATCCTGCAGCACCGCAGCCCCACCCACACCTTCCGTGAGGACCTGAACACCTTCAAGGCACAGGTGAGCACCACCCTGACCGTCCTGCCGCCGCCCTCCGTAAAGTGCCAGCAGATGACCGTCTCAGGGAAGCACCTCACCGTGCTGAAAGTGCTCAACGCCTCATCCCAGGAGGAGGTGTGCGTCCGGGACGTCCGCATCCTGCCCAACTTCAACGCCTCCTACCTGCCCATGATGCCCGACGGGTCCGTCCTGCTGGTGGACAACGTCTGCCATCAATCGGGCGAGGTGGCCATGGCCTCCTTCTATAGGATGGACAGCCTCTCCTGCCGCCTTCCCAGCATGCTCAGCGCCCTGGAGGAGCACAATTTCCTGTTTCAGCTGCAGGTGAACGAGCAGGCCCAGGAGGACAACAAAGAGGGTCTGGAGGTGCCCCTGGTTGCTGTGCTGCAGTGGTCCACTCCAAAACTGCCCTTCACCAACAGCATCTACACCCACTACAGGCTGCCCAGTATCCGTCTGGACAGGCCGCGCTTTGTGATGACCGCAAGCTGCGAGTCCCCGGTCAAGGTCAGGGAGCACTTCCGGGTCAGGTACACCCTGCTCAACAACCTGCAGGACTTCCTGGCGGTCAGGCTGGTGTGGACGCCCGAGGGAGCCCAcagtggtcgtGCTCAGTGTGCGGACGAGTGTCAGTCGGTCAGCTCCGTGGTGTGCCACACCCCCCTCAGTAACCTGGGTTACTGTCGCCGCGGCAGCACGCTGTCCTTTACAGTGGCCTTCCAGATTCTGCGGTCCGGGCTCTTCGAGcTCAGTCAGCACATGAAGCTAAAGCTGCAGTTCACAGCATCAGTGTCCAACCCCCCACCCGAGGCCCGGCCCCTGTCCCGCAAGAGCAGCCCATCGTCCCCGGCTGTCCGGGACCTGCTGGACAGACACCAGGCCAGCCTGGGCCGCTCGCAGTCCTTCTCCCACCAGCAGCCCTCGCGCTCGCACCTCATGAGGACCGGCAGTGTTATGGAGCGCCGGGCCATCACGCCCCCTGTGGGCTCCCCCATTGGCCGGCCGCTGTACCACCCCCAGGAGAAAGCTGTCCTCTCGCTGGACAAGATCGCCAAGAGGGAGTGCAAAGTATTGGTGCTGGAGCCTGTCAGTTAAGGACGGACAGAGACAGGGACGGACGGACAGGTATCAGTAGCCAACAGACACAGACTTTTCATCGACTGGGTGGACTCCAGGTGCGAACTGGAaattgcgttttttttttttttttttttacttatttaatttttttgtatgtgttttttttgtattattatttgacgTCATC

Function

GO: NA

KEGG:

id description
K24261 MAP11; microtubule-associated protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166289 lncRNA downstream 54727 3939908 ~ 3940568 (-) False AMCG00011775
TU166284 lncRNA downstream 64208 3927393 ~ 3931087 (-) True G132609
TU166202 lncRNA downstream 116110 3877046 ~ 3879185 (-) False AMCG00011765
TU166187 lncRNA downstream 153824 3841232 ~ 3841471 (-) True G132530
TU166180 lncRNA downstream 196009 3798871 ~ 3799286 (-) True G132523
TU166313 lncRNA upstream 73783 4078449 ~ 4090202 (-) True G132633
TU166352 lncRNA upstream 218034 4222700 ~ 4222974 (-) True G132668
TU166353 lncRNA upstream 227810 4232476 ~ 4236299 (-) True G132669
TU166357 lncRNA upstream 240276 4244942 ~ 4249033 (-) True G132672
TU166399 lncRNA upstream 521617 4526283 ~ 4526792 (-) True G132707
AMCG00011773 mRNA downstream 24769 3965247 ~ 3970526 (-) True AMCG00011773
AMCG00011775 mRNA downstream 50776 3937484 ~ 3944519 (-) True AMCG00011775
AMCG00011772 mRNA downstream 84323 3904129 ~ 3910972 (-) True AMCG00011772
AMCG00011765 mRNA downstream 118186 3869832 ~ 3877109 (-) False AMCG00011765
AMCG00011763 mRNA downstream 142908 3846475 ~ 3852387 (-) True AMCG00011763
AMCG00011778 mRNA upstream 3291 4007957 ~ 4013855 (-) True AMCG00011778
AMCG00011780 mRNA upstream 64446 4069112 ~ 4070390 (-) True AMCG00011780
AMCG00011784 mRNA upstream 140984 4145650 ~ 4148931 (-) True AMCG00011784
AMCG00011783 mRNA upstream 147450 4152116 ~ 4161716 (-) True AMCG00011783
AMCG00011786 mRNA upstream 247933 4252599 ~ 4258810 (-) True AMCG00011786
TU166201 other downstream 116898 3877046 ~ 3878397 (-) True AMCG00011765
TU165976 other downstream 787941 3201370 ~ 3207354 (-) True G132352
TU165963 other downstream 821459 3169761 ~ 3173836 (-) True AMCG00011741
TU166322 other upstream 159965 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 213883 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 469939 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 469939 4474605 ~ 4476979 (-) False G132693
TU166389 other upstream 478600 4483266 ~ 4492313 (-) False AMCG00011792

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067636 True 5070 mRNA 0.42 10 NC_007118.7 26366451 ~ 26389908 (-)