RNA id: AMCG00011780


Basic Information

Item Value
RNA id AMCG00011780
length 447
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00011780
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4069112 ~ 4070390 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAGATGGGAGACAGATTATCTTTTTACCGAATTCGATGGCAAACCAATGTGTTTAGTTTGCTTGGAGATGAAAGCGTCGCCATTACAACACCACtcacaaagaaaatatgatgAGTACACCAGAGCTGCTCGAGCTGCCATCATCACTGACTTGAAGGGCAAAATACAACgacagcaattttttttttaccaaagcCGCAACTGTGCAAGAGTCCTCTCTAAAGGTAGAGTGTCTCATGCTAAGAGCCTTCACTTGAGCCATGTCATGGATTTGGTGACTAAGGTTACCAATCTCATTCCAGGTGGAAACAGGTCGCTTAGTCTTAGGAAGTTCATGCCCTTTTTGGAAGAGGTGAGCGCTGCTTATGGAGATTTACTGATGCATACTGAGATCAGATGGATGAGCCGTGGGAAGTGTTTAGAGGTTCTTTGCACTTCGGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166298 lncRNA downstream 35275 3968490 ~ 4033837 (-) True G132621
TU166289 lncRNA downstream 128544 3939908 ~ 3940568 (-) False AMCG00011775
TU166284 lncRNA downstream 138025 3927393 ~ 3931087 (-) True G132609
TU166202 lncRNA downstream 189927 3877046 ~ 3879185 (-) False AMCG00011765
TU166187 lncRNA downstream 227641 3841232 ~ 3841471 (-) True G132530
TU166313 lncRNA upstream 8059 4078449 ~ 4090202 (-) True G132633
TU166352 lncRNA upstream 152310 4222700 ~ 4222974 (-) True G132668
TU166353 lncRNA upstream 162086 4232476 ~ 4236299 (-) True G132669
TU166357 lncRNA upstream 174552 4244942 ~ 4249033 (-) True G132672
TU166399 lncRNA upstream 455893 4526283 ~ 4526792 (-) True G132707
AMCG00011778 mRNA downstream 55257 4007957 ~ 4013855 (-) True AMCG00011778
AMCG00011779 mRNA downstream 64446 3995295 ~ 4004666 (-) True AMCG00011779
AMCG00011773 mRNA downstream 98586 3965247 ~ 3970526 (-) True AMCG00011773
AMCG00011775 mRNA downstream 124593 3937484 ~ 3944519 (-) True AMCG00011775
AMCG00011772 mRNA downstream 158140 3904129 ~ 3910972 (-) True AMCG00011772
AMCG00011784 mRNA upstream 75260 4145650 ~ 4148931 (-) True AMCG00011784
AMCG00011783 mRNA upstream 81726 4152116 ~ 4161716 (-) True AMCG00011783
AMCG00011786 mRNA upstream 182209 4252599 ~ 4258810 (-) True AMCG00011786
AMCG00011790 mRNA upstream 204669 4275059 ~ 4292903 (-) True AMCG00011790
AMCG00011787 mRNA upstream 222820 4293210 ~ 4326623 (-) True AMCG00011787
TU166201 other downstream 190715 3877046 ~ 3878397 (-) True AMCG00011765
TU165976 other downstream 861758 3201370 ~ 3207354 (-) True G132352
TU165963 other downstream 895276 3169761 ~ 3173836 (-) True AMCG00011741
TU166322 other upstream 94241 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 148159 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 404215 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 404215 4474605 ~ 4476979 (-) False G132693
TU166389 other upstream 412876 4483266 ~ 4492313 (-) False AMCG00011792

Expression Profile