RNA id: AMCG00011784


Basic Information

Item Value
RNA id AMCG00011784
length 222
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00011784
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4145650 ~ 4148931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCCAGGTTTGTGTCTGTTTCAATGCACTGGaagaacaacacaaatgcactggacaaatgTCTGGAGTTCTCCAAGGAGAAGCACGACGGCAGCTTCCTGGACACCCAGCATACCCAGTTCAGCTCCTCGGTGAAATGCGTGGTGAAAGAGCTGAGCAGCCAGATCCACTACCTCACCCAGGTCAGAGGaggggggagacagagagagtcagaCTGA

Function

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166297 lncRNA downstream 46766 3968490 ~ 4098884 (-) False G132621
TU166313 lncRNA downstream 55448 4078449 ~ 4090202 (-) True G132633
TU166298 lncRNA downstream 111813 3968490 ~ 4033837 (-) True G132621
TU166289 lncRNA downstream 205082 3939908 ~ 3940568 (-) False AMCG00011775
TU166284 lncRNA downstream 214563 3927393 ~ 3931087 (-) True G132609
TU166352 lncRNA upstream 73769 4222700 ~ 4222974 (-) True G132668
TU166353 lncRNA upstream 83545 4232476 ~ 4236299 (-) True G132669
TU166357 lncRNA upstream 96011 4244942 ~ 4249033 (-) True G132672
TU166399 lncRNA upstream 377352 4526283 ~ 4526792 (-) True G132707
TU166402 lncRNA upstream 415284 4564215 ~ 4568124 (-) True G132710
AMCG00011780 mRNA downstream 75260 4069112 ~ 4070390 (-) True AMCG00011780
AMCG00011778 mRNA downstream 131795 4007957 ~ 4013855 (-) True AMCG00011778
AMCG00011779 mRNA downstream 140984 3995295 ~ 4004666 (-) True AMCG00011779
AMCG00011773 mRNA downstream 175124 3965247 ~ 3970526 (-) True AMCG00011773
AMCG00011775 mRNA downstream 201131 3937484 ~ 3944519 (-) True AMCG00011775
AMCG00011783 mRNA upstream 3185 4152116 ~ 4161716 (-) True AMCG00011783
AMCG00011786 mRNA upstream 103668 4252599 ~ 4258810 (-) True AMCG00011786
AMCG00011790 mRNA upstream 126128 4275059 ~ 4292903 (-) True AMCG00011790
AMCG00011787 mRNA upstream 144279 4293210 ~ 4326623 (-) True AMCG00011787
AMCG00011789 mRNA upstream 195405 4344336 ~ 4355243 (-) True AMCG00011789
TU166201 other downstream 267253 3877046 ~ 3878397 (-) True AMCG00011765
TU165976 other downstream 938296 3201370 ~ 3207354 (-) True G132352
TU165963 other downstream 971814 3169761 ~ 3173836 (-) True AMCG00011741
TU166322 other upstream 15700 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 69618 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 325674 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 325674 4474605 ~ 4476979 (-) False G132693
TU166389 other upstream 334335 4483266 ~ 4492313 (-) False AMCG00011792