RNA id: AMCG00011785


Basic Information

Item Value
RNA id AMCG00011785
length 3589
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00011785
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4243172 ~ 4249417 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGGAATCCCCGTCCTGCGCGCGCCTATGAGAAGAGCCCAGGCCGGGGGGGACGCGGGGGTGTCGTTAAAACAGACGGGTGCTGGAAACATTGTAGACACATTGCACTGCGTTCAACAGAGAGCAGCGCACACAGGGCTACAGTCCGCGGCCCGGTTGTAACCATCTGTATGATCTACTGCTGCGGGAAGGAAGAGCAGGAGCAGCCCGGCGAGCCGCGCCTTTGGATGAAGAGAGAGGCCGGGGCAGGACGGGACAAACGACAGGCCCCCACTGCGCCAGCGACGCGGGAGATGTACGACCTAGCGGCGGTCCCGGAGCAGCCCCAAGCCGGCCGCTTTCCGCCGGAGGAGGGCCGCTATAACCCGGGGCAGGCGGCGGAGTTCAACCCCGGCCGGCTGAGCCTCGACTCCCCGCAGCGCCGGCTGGGCAGGCGGGCCCCCAAGCTGGGCGAGATCGGCCGGTCCCGGAGAGTTGTGATCGAGGATGAAGATTTTGATGACATGATGAACAATAATGGCCTTTTCCCCATATCCCTTAACCTGACGCCTGTGGCCTAGATACCCTGCGATACCGACTGTGCCATGCCTACACGAAGCCAAACCGCAAAACCGTGGGTCGAAATGCCTTTTTACCGGGGAAATGAATTGGAGACGTCAAAATCTTCATGGggactttatttattgtttaacttCAAGCACTTTAAGCTTATTTATGGAACACTGATACAATTGGTGTGCTTTTCTGTGGTTTCTCTTTCATTTCGGTTtcttaaagtgttttaaaaaataataataataaaaaaaaaacttaaaaaggtGTTCTAATTTTCTCTTCGATTTGGTCATGTTCATAATAGGCTGACCACTATGCTAAGTTTATAGTAGTTTATGTATAAGAAAACTATAGTAGATCTTAATTTTTCGGgatgttaatttgaaaaaatgttgtatgcTTTTTAAAAGGTTCTTTAGCGAATGTAAAATGAGTTGTAAACTTACTATGGTGCGACATCCTTCGGAATATGACCATTTCTGTAATAGGGGGTGTAAAGCCTGCAGCCAGACTCATTTAGTTTCTAATCTAATATCCCTCCGTAACTGCATACGTATATGGAATTATATTGAAACCATACAAAAGGGCCACACAGGAAATGAGCATGAGTTTTCACATGTGGCAagaaatatatctttatatctTTACGTGGAACATCTGTTATATGCATTGTCACGCTGACACTCTCTCTTTGCAAGCATGCACCTAGAAACTATATACCTTGTGTTTCTATACAGCATTGTGTGACATAGCATTCCATTTGTACgttgaaattgaaaatactaAAGCTAACGTAGTCTGGCTGCAAGCATTTCACCAGCAtctccttatttaaaaaaaatataataataataataataacaataattagagATTCCTCAAATATGGAGATTTATCAGAGTAAACTGTAGAAACTGGAACTGTTAGGGAGAGAGTGGTAGGACATATTTAGTATTTAGAAAATAAGATGTCCTAATTGAAAACCGACtttccttttatatatttttgtttcatgtctTAAAAGTTGGTCTGGAATCTATATATTGGCCAAAATGCAGCTTCTCGtacagcaaaaaagaaaaacgaaaaaaaaaaagtgcaatactATTTCTTCATATGTTTACAGCTTATCTTTTAAGAagggatgttttgttttagagaTGACCGTCTTCACTGGAAAGAGAAGTATAATTGCTTCTCATTAGCTATTCTTGTTTGGAAACTGTTATACTGGATATTTAAGCAGACTGGGAATTAATCccactgttttaaatgttacggttattaatttattaaaaaaaaaagacaaaagctgTAGAAAGCCCTGTACCTTGTATTTCAAATTGGATATCCGCATGTTGGCGATTGATTGGCACATGATTTCTATTTTGCGACTGTACCTAGGTGTTTGTACAGTGCATGGTGTTGGTAAAGGTTGCATGAGTTATGTTGTGATCTACCATATCAAGATATGCTTTGTATCATGAGAGCACCGAAACATCCATTCATTACTTTGTGTCTGTCAATTGCCATTTTTTAGGCAGCCTACAGCTTGTTTAATTTTAGGTTTAAattgtggttatattttaatttaaaaatcggCATCATGTTGTGATGAAATCCAGGACTCTGGATGAAATATACATTCAATTGTGAAATCCAAGGGTACAGAAAACTCAACAATTcgagaagagaaaaaataaaaactaaaataaacatgcattgcCTTTGCCTGCCTTATTGATTGTCTCTCCGATTGTACGCTTTGAACAAAGGTATCCATTCAACCTAAACGTCTGTACTAGGAAGCGACATTGGAATATTTTATTCCACTCCCTGTGTTCCAGTTGATGTTTCTAAATGAAGGCATTTACATTGTCAAGAACGAGAAGGATGAAAATGTTGCTTGCTGATTTTCAAAGTAAACTTTACAGTTAGAATGATGTAAAGTATTCCTGgttaaagtgaaataatacGTTTGGTCATTTATGCTTCAGGGTTTGTATAGCAAGGTTATTTAAGTATGTAGGCATTTCATATCAGACATACAATGCTAATACTGTCTTTGCATATAATCACAGTATTTCAACACAATCTTAATGTTGCACTgtgtaaaatactatattttCCAAACTTCAATACTGCTATTTTTACCTTTCGTGTTATGACACATATGACACAATCTTCACAATATCCTGGCTGCCAACCCCACCAGGACACAAGTGTTAAGTGTCTTCAGTTTTTTGCTATTTAAGGAATGCATGTGATTGATCTATCTATGACAGTATTGATTGCTCATAGGAGGATGGATTTTCctattaaaaatatgcatttacattttaaacctgtgTGTTGTGAGGTTATTTGTACCATTAGTGCTTTAACAGTATTGGGCTTGTTGAAGCTTtgccattttttaattatcattattatgctttgaattgcactgcattatgtaaattggaatttgtaatatgttttatgcattgaactgcactgtatttttgcatgttgtattgtgcttatattttggataagggtgtctgctcataaataaataataatccaatagtaaacaaaacaacaaagtgcaTTACAGGTTTCTGTCACATGAGGGCAGAACTGACTGTAAAACAATCTACTCCACTTCCTACAACCACCAGGACGTTGGATACAGTCATTAACTCCTTTTGGCACACAAAGAATACTAAATGCATTATCTGCTTTTTAGTATAACGTGGGACAGTACAGATTTTCATctgcactaaaaaaaaaaaaaaagtttgttttcttgaataaaatatttatttttacattaataaaacatgacttGGTAAAAGTCCCCCAAATTGAGAAACCCCAGGACGTTGAGGCATCCTTCTGTTTGCTAATGGAGCAGGGGAGTGTGTTTCCTTACACACAAGATAGGATGTAATACAGACaagcgtgtttgtgtgtgtgtgaaaggaatcattgttcaaattaaaatgaaagtgctgAAAACTAACAACCGgtatgtttaaatatgcagA

Function

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166337 lncRNA upstream 24189 4218547 ~ 4218983 (+) True G132655
TU166266 lncRNA upstream 131242 4109513 ~ 4111930 (+) True G132596
TU166255 lncRNA upstream 225416 4016127 ~ 4017756 (+) True G132586
TU166241 lncRNA upstream 247443 3990427 ~ 3995729 (+) True G132573
TU166243 lncRNA upstream 250268 3992264 ~ 3992904 (+) True G132574
TU166343 lncRNA downstream 10127 4259544 ~ 4322290 (+) True G132660
TU166417 lncRNA downstream 503305 4752722 ~ 4752923 (+) True G132722
TU166421 lncRNA downstream 514272 4763689 ~ 4763888 (+) True G132726
TU166429 lncRNA downstream 525737 4775154 ~ 4775539 (+) True G132734
TU166452 lncRNA downstream 598115 4847532 ~ 4847740 (+) True G132755
AMCG00011781 mRNA upstream 62040 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011782 mRNA upstream 70495 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011777 mRNA upstream 268033 3970320 ~ 3975139 (+) True AMCG00011777
AMCG00011776 mRNA upstream 277989 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011771 mRNA upstream 300273 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011793 mRNA downstream 344543 4593960 ~ 4601353 (+) True AMCG00011793
AMCG00011794 mRNA downstream 396893 4646310 ~ 4648415 (+) True AMCG00011794
AMCG00011796 mRNA downstream 434259 4683676 ~ 4697341 (+) True AMCG00011796
AMCG00011795 mRNA downstream 470397 4719814 ~ 4721921 (+) True AMCG00011795
AMCG00011801 mRNA downstream 538898 4788315 ~ 4804985 (+) True AMCG00011801
TU166232 other upstream 299810 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 304780 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 346993 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 1038575 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 1238510 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 1510441 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1579384 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1637588 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1637588 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 2006533 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile