RNA id: AMCG00011810


Basic Information

Item Value
RNA id AMCG00011810
length 4916
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00011810
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5166168 ~ 5219056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTCCCTTCGGAAGATCCCTCTCACTCGTCCCACACTGCAGAATGTGTCTGCCCCTGTGATTGACATCAGGCAGGTGACAGGGCAGCTGTGGCGCCAAGGACCCCTAGCTTTGTCAGACTCTGCTGAAGCGAGCCACAGAGAAAATCCCCATTGGGGATCTGAAGGTGGAACGACAAGCCACGGATCCCAAAGAAAGATGGCAGAAAACAATCTCTTCTGTCCTCTCATTCAGCAAATGATCAACCATTCAGTGAATTCCAACAACTCTGACAGTAGCATTAACTACACAACGGTCTGCCTGCATGGCATCTTGTCCGTTTTCGGGATCCTGGAGAACATTCTGATCCTGTGGGTCATCGGGTTCCGCGTCCGCCGGACCGTCATCAGTGTCTGGATCCTCAATTTGGCCGCTTCCGACCTGCTGGCCACCGTCTCCCTGCCGTTCTTCACCCACTTCCTGGCGATGGGCCACACCTGGACCTTGGGCACCACCTTCTGCAAGATCCACTCATCCATGTTCTTCCTCAACATGTTTGTGAGCGGCTTCCTGCTGAGCGTAATCAGCCTTGATCGCTGCCTGGTGGTCATTCTCCCCGTGTGGTCCCAGAATCACAGGGACGTGCGCTTGGCCACTCAGGTGTGCGCTGGGATTTGGGTGCTGGCCATTATCAACACCATTCCGTATTACATCTTCCGGGACACTATCGTGAGGAAGGACGGGAGGATCATGTGCTACTACAACTACGTGCAGTACCGGTCCCCCGACGACGAAATTGACCAGCTGTGTGGGGTAAGGCAAGACATCCTGGCTGTCAGCAAGTTTATCATATCCTTCCTATTACCCCTGATTATAATCATAGGCAGCTACATGGCTGTCAGCTCCAGCATCACCAGACGGGGCCGGAGGCGTACCTATCGATTTTTCCGGCTTGTATTAGCAGTGATCATCACGTTTATCGTGTGCTGGATCCCATATCACATCTTCAGCCTACTGGAGGCCGCCTCCCACTATCACCATAGCCTGCGATTGGTTGTCGCCAGGGCCCTCCCTCTGGTCAGCAGCCTGGCCTTCATCAACAGCGTGCTCAACCCCTTCCTGTACGTCTTCAGCTGCCCCGACTTCATGGCCAAGATCCGCCAGTCCCTCAGCGTGGTGATGGAGAGCGTGCTGATGGAGGACATGGACTTCAGCCACCGGCGCAGCACAACGCGCTCCTCCGTCAGCACCAGCGAGCTGCTGAGCCGCGGGCAGAAACTCCGCGGGCATCGTGAGAAGTTGGGCAGCActgagaaggaggaggagaaccCGGCCGTTTTCTGATGGCTTCCCGGTGACGGGGCGGGATCTTCCAAGTCTAGTGACTATTGTTTGCAGTAAGAACAAATCAATTAGTGTGCAGTAATATGCTATGAAGTCATTACTGTACGGCAAATTTAACTCTTCAATTGAGTTGTCCTCTTGATTTGTGTAAATCTAAAGTTGATCAGTGGCcaatataatatatgtttttgtacagggagaataaaatacttttttaagtaATGAAAAATGCACCTCGAGACAGAATTGCACAGGTTAGTCTTTTCTGAGATTTTCCACTTTTGGATTgtactgttgttattatttttattttacttcatacATTGTATGCATTTTGCTTATGCAGCTACTCATCTTTCCCCTCtatcagttcaatcaactgcaTGAAACGTTTTCCTTATAGAAGGTAATACACCTTCATCTGTTTCTCTGAGATAAGAAACATGATGCCCATGAACTGCAACATCTCCATCTTTGTGCTTGAAAATAAACAGCGTCTCTCAGAGCATGACTGGATTGTGTGTTGGAAATCGAGCCTCGCTTACAACCACACGATGCTCAATCTCACATGTATGCATCGCAAGCATAGCCCATCCCCCCGCATTCAGGTTAACCTCAGTGCGTGTGCTGATGAGGCAGGAACATGAACATCAAGGTGCACATGGATAAAGATCATTCGCCGGCCCTGTTTACCGAGAAGTGTAATCTGGCATGGTGCCCAGGAGGTAATGAAAGctgcatttttaatgattatgAATAATGCTGTGCACCATGGTTGTTGCAATAGAAAcctgtgtgtttaatatatatatgtatagcacACCACATCAATAGACTTTCCATATTGTAAAGCAGAAACAAGTTTTTtattcgccctggataagggcatctgccaataaataaataaataaataaataaataataataataataataataataataataataataataataaaccttatAAATAGTGATTAGGGAAgtattgtgcatgttttttagaattttttcaGTCAATAGTTTAGTCATGTgcttttgaaatttgaaatccCTCATTGCTTTATAGTAATGCACTGCTCCCTGATGGCAATACATGTTACTGCTCTCTCAAATGACAAGGAAATATTCTGTAAGACATAAAGCGCACAAAATAGCATCATTAGTAAGATCTAGTCCTGGACTGCTTAACTATCTGTATTGGTTAAATGGCTTTAGGCATAATGTTGTATACAATACACCAGAGAATGTGGAAAgatattgattaaaatatatttcatcaGTCATGTTGAGTGTTTTGGATTTTGGTAAATTTACAGTGATAATTTTATCACATAATGTCCATATTTTGGCAGAATTAAAATCTGTGCTTAACTATgctacatatatttatgttaaacTAACCTCAAGTCCAGCACATTTTAATGATAACATGAGAAGTGCAGTAAGCTGAAGTAGGTAGAAAATGTTCATAAATACAGCCCATGGTGTCAAACAACCTTTATACCAGCAGTTTGATtctcactaaataaataaaacaatatcaaacaaATAAGAATATGCTCCATCTGTCTGCTTTAAGACACAAAGGAACAGGGAGCCTGCAGACGTTCAATTTCTGAATGTactttgtttattaatgaatgTCACCTGTACAGAGTGAACAGGTAAAAGTGAAGGAGGTAAAGAAGAAGTCTGTCTATTAGCGTGCTATCTTTCTTCCCCCAAACAATCATTGCAGGCAAGTGACTTCCAGTTTAAACttcatataacatttttttaattttctctctctgaacTGAATCCTGAATCTTACCATATTCGGCTCAACAGACTAACAGTTATTTGCCAGATTAGTAGAAAAGGCAGGAGATGTGAAACTCTTCAATGGATAGGACCTGCCTTTGAAACACATTAGTCTAAACTATACTGcactattttatttcaaatgcaaatccTTGCACCCTTGTattcatgtatattattattatgagtatttattgcttggcagatgcccttatccagggcaacttacagaaTATAAGCACAAAGtataatacaaagtgcaaaaatacagttcagtccaaggcataaaacattacaaattcagatgtacataatacagtgcaattcaaagcataatacattttacaaattccaatttacacaagtgaatacaataaatgacgtCTAACATCCTGGAGtgtaaaagctaagtgcggaCAAGATGTTCATCTCATTAGAATACTCCTGCTGAAATagggtttaaaattaatatgtaaataattgaGGTTTCACaaaaattcattaaaattacattgcaaCTATATCCGTATTGTGTGCTTTTTCATGAATGTATAATTTGACATAGATGTTCTTCTTCACTTATCTTTATTGACACACTCACATATGTTTGGAAGagcacatgtataaatataatttaagggCAATTGTAACAGAAATGGCATTTTATGTTTACTTCatagatatttttgtattaaaaataaaaaacatttttaaaagtacttaaatgtgtaaactcattattttattggaaAATTGTATACATAAGTAGGTGCGTTACAACTTAAGTATAAGTATATGAACACATGAAACATAAACACTTAACTGGAAGGAATGCAAAAACAGTCAATGACCATTTTGCGCCAGAATTATATCATCACTTTCTGTAATCACACAGCAAATGTATGTCctaatgaaatgcaatgtaattCATCCTTTGAAAGTATGGTGTGATTCAGACAAACAATGGGTCGTTGGCCGGCAAGGAAACAGGCAGGAGGTCAGTTGATTATGTGAACAAGGCAAAGAGGGAAATGCAAGAGACATTGGTCACAAATGGGCAAAGGTCAATAACAAGATAGGTCTGGAACACTCAGTAGAGGTGCTGGAATGGCAAACTAGACTTCACATTGGTTGGTGGGAACAACGGGGAATACATACTAGTGTTGATGAGCAGGAGAATATGAGACAGGTGTGGCGATGATTCAGTTAAGCAGGGACAATAATAGAATAATTAGGTACCAGGAGATCCAGGGAAAGACACAGAGGATGCTTTGGTAATagcgacctctggtggcgaaccTGGGGATGGTTGAGCTGTGGATGTAACATATGGcctaagtatatattttttaaaagatgtttaatcgcagcagaaataaaataaatacaaatctaatttaaataaatagtaagtCTGCTCTCCCTACAGATGCGATGCCACAAAAGCAGTTataaacatttcttaatttcagaTAAGAAAGTATATAGgaagtaaaacaagaaaaaggtgTTTTAGGTGgtttaacacatttgtacatttcccCATGGTgaacaaaacatgtatacacTAAAAAGCtcaataattatgaataaaattatatatttatgattattatcatgGCAACTGTATTTGTGACTTAAAATCCATTGTCCGTGCATGGTTGTTATTGTCAAGTCATGAATAAAgcagcactttattattattattattattattattattattattattattattattattatatagggGAAGAAGTAATCCACACAGAAAATAACTCATGTC

Function

GO: NA

KEGG:

id description
K06715 PTGDR2, GPR44, CD294; prostaglandin D2 receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166578 lncRNA downstream 2357 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 96501 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 146745 5018963 ~ 5019423 (-) True G132819
TU166456 lncRNA downstream 315166 4850720 ~ 4851002 (-) True G132759
TU166444 lncRNA downstream 354310 4811547 ~ 4811858 (-) True G132747
TU166644 lncRNA upstream 71118 5290174 ~ 5325922 (-) False AMCG00011812
TU166640 lncRNA upstream 87441 5306497 ~ 5328724 (-) True AMCG00011812
TU166732 lncRNA upstream 412038 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 488227 5707283 ~ 5793845 (-) False G133032
TU166818 lncRNA upstream 514038 5733094 ~ 5758860 (-) False G133032
AMCG00011811 mRNA downstream 15955 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011809 mRNA downstream 32624 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011802 mRNA downstream 358479 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 385678 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011798 mRNA downstream 396364 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011812 mRNA upstream 83303 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011818 mRNA upstream 142281 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011822 mRNA upstream 183589 5402645 ~ 5460948 (-) True AMCG00011822
AMCG00011821 mRNA upstream 309227 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011827 mRNA upstream 417065 5636121 ~ 5638116 (-) True AMCG00011827
TU166568 other downstream 19363 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 161559 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 571719 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 673855 4483266 ~ 4492313 (-) False AMCG00011792
TU166381 other downstream 689189 4474605 ~ 4476979 (-) True G132693
TU166801 other upstream 482030 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 488227 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 499522 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 522157 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 522157 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile