RNA id: TU166568


Basic Information

Item Value
RNA id TU166568
length 1490
RNA type TUCP
GC content 0.39
exon number 4
gene id AMCG00011811
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5142465 ~ 5150213 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCTGTGTCAGACGTCAAGAGAAACTGTTCCACTCCTTCTCTTGGTAGACGTGGGTTGACAAAAGGCTATAAACAATGAAAACGGTATTCGCTAACAAAGAGTGGATCAGTCAAATCTGGGCTGTCACTGTCATTCCTCTGAGGTCACAGTACTTTGAATACCTGTGTGTTCTCAAGGAATAAATCCATTTTATGGAAATATGAttcctcttaaaaaaaatacaatccgGTTCAACTTGATGGACCAGCTACATGATTACGTCTGCGATGGTAAGAGACAACAATGACGACAACAGTAGTAATCCAGCAGCCCCAGCCCACCATGTATGTAAACAACTCAAATCAGTGGAGTACGGGCATCTGCGACTGCTGTCAAGACCTAAAAATCTGCTGTTGTTCTTTCTGGTGCTTCCCCTGTTTTGCCTGCCAGACCACCCGTGAATATGGGGAATGCCTGTGTCTCCCCCTTCTGGATATGTCTGGTTGTATACCACCCATAGGTCTGACTCTGAGGGCAGGAACCCGAGAGCGCTATGGGATCAAGGACACTGTCTGCAATGACTGTCTATACACCGTTTTCTGCTACACTTGCTCTTGGTGTCAGATTGCCAGAGAGATAAAGTTACGCAACACACCGGTAGTTCTGACCCAAGCCTTGCCCAGAGCCACCGCCAGAGTCCACCAGGCTTGACCAGTGAACCTTCCCAGCAATCCTCAGGACCAAGTGAAGGACTTCCTTTAACCCTCAAGGCCCCAAGTCAGGCCATTTGCAACATGTGTATCCTCAgtaatacattactttttaattgttgttttaattatttctacTACTTgatttcagtagtttacaaGCCCAGTTGTGAATTGGTGttagtaattaattattttgaggtTTGACATTACTTGCTTGACTGAGGCAGCATCAGACCTTTTGATTCCCCCCCCTTAAGGGGAATGAACCAAGGATTTGCTGCAGACATGGTGATTGGGTTGCTCAGGGGATGGTGTTAGGAACCAGGTTGTTATAGTTTATTGGAGACCAGCATTTAGGTTGTCTACTCATGTAATGTCATTATAAATTGCATTGATAGTTTCTGGGCAATTACATTTCTGACATTAATGACTGTTTTCAATAAATCATGataaaaggtacattttaaCTAGCTCTTGAATGGTAACATACTTTTGCAATAGTTTTATATATGAATTGTTACAGAtgatgatttatattatttttcataattttctgaactttttgtgtttgttttgtttagcagtGTCATTCGTTTAAACAATCCAATGAGGGatagaaacacaaaaagtatTCATTTGTGGAAgctcaaaacattgaaaaggtttaatataaaataataaaaaaaacataataatcttTACATGTGTACCAGTTAAGCAAGaatttcttaaatatgtatttcatgaACTGATGTTATTCAAAcccaataaacaatacactaatAATTCAATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166545 lncRNA downstream 72798 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 123042 5018963 ~ 5019423 (-) True G132819
TU166456 lncRNA downstream 291463 4850720 ~ 4851002 (-) True G132759
TU166444 lncRNA downstream 330607 4811547 ~ 4811858 (-) True G132747
TU166409 lncRNA downstream 447660 4694438 ~ 4694805 (-) True G132717
TU166578 lncRNA upstream 15380 5162185 ~ 5163811 (-) True G132862
TU166644 lncRNA upstream 143369 5290174 ~ 5325922 (-) False AMCG00011812
TU166640 lncRNA upstream 159692 5306497 ~ 5328724 (-) True AMCG00011812
TU166732 lncRNA upstream 484289 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 560478 5707283 ~ 5793845 (-) False G133032
AMCG00011809 mRNA downstream 8921 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011802 mRNA downstream 334776 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 361975 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011798 mRNA downstream 372661 4766530 ~ 4769804 (-) True AMCG00011798
AMCG00011800 mRNA downstream 396929 4745240 ~ 4745536 (-) True AMCG00011800
AMCG00011810 mRNA upstream 19363 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011812 mRNA upstream 155554 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011818 mRNA upstream 214532 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011822 mRNA upstream 255840 5402645 ~ 5460948 (-) True AMCG00011822
AMCG00011821 mRNA upstream 381478 5528283 ~ 5529716 (-) True AMCG00011821
TU166493 other downstream 137856 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 548016 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 650152 4483266 ~ 4492313 (-) False AMCG00011792
TU166381 other downstream 665486 4474605 ~ 4476979 (-) True G132693
TU166383 other downstream 665486 4474605 ~ 4476979 (-) False G132693
TU166801 other upstream 554281 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 560478 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 571773 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 594408 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 594408 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile