RNA id: TU166640


Basic Information

Item Value
RNA id TU166640
length 1121
lncRNA type sense_over
GC content 0.39
exon number 7
gene id AMCG00011812
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5290174 ~ 5328724 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATATGAATGCAGAAATATTCTCTTTGGGCTTCATACATATGGATATACTGTAACTATTAAAAGCGGGTCATATGACCTACAACTCTGAAAGTTTTACGGTCAGTAGGTTTTTATTCTCTGATCAGAGACCACCAATACTAATTCAGTTTTAGCTTATTCTGTTTTCATAGTAAACTTACTTTTTCAAATGGCTGAGTATTTGTGTGTACAATGATGCATTGAAAGTCATAATCTGAGgttattaatttacaaaacagaagTGGTCTGTGGACTAAATCAGGGAACTTCCTCAAAAACCAACAAGTTAGTTAGAAACAACGTTATCAATCTGAAAGCTAATTTAAACCGTTTCTTCAGAGTGGTTGACACACACTAGTGCAAGTAAATGGATGTCTTGTACGCCCAAGTGAATTTTTCCAATAAGAAGGGGAAAGAGCACAAGCTGGGTGACACAGCAGaacatGAAGTTACTTTCTCTGAAGTTCAGACTGCTGGACAGAATTCCTCACAGTCACCCATAGTACCAGACAATACTCCCCCTAAGACAGCTGAGGGTCAAGCTGCCTCCAGACCTTATCTGACAATATCGCTTGCAGTCCTGTGCTGTTTGTTGGCAGCGATAATTATTGCACTTGCTGTTTTGCTTTACAGAATCCACAAAGAAGACTAATGCGGAAGAGATTTCACAACTTAAGGAAGAAGACAAACTGCTATTGCAACTaaatatattactaattcaaTCTAACAAAAGTGCAGATGAATGGAGGAAACACAGTGTGTCTTGCAACGCATCTCTAAATGaagaaaatcaaaatgtgaaGACATGCACTGAGAAACTACAAAATGGAATTACTGGATATTTCTGTCTGAAGCCTTGGGTGCCATTTTGTAACAGATGTTACTTCTTCTCAACTGATGAGATGAACTGGAAAAGCAGTCGTGATAACTGTTCATCAATGCAAGGACACCTTGTCATCATAGAGACTGCAGAGGAGCAGATTCAGATCCCTTAGGACTTGGTCTTGATTCAGACTTGGTCTTGGACTAGGATTGTCCTGGTCTTGATCTTGACTTGAGCTCAGATAAGGTGGTCTCGACTCCCATGGGAAACCCAATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166578 lncRNA downstream 142686 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 236830 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 287074 5018963 ~ 5019423 (-) True G132819
TU166456 lncRNA downstream 455495 4850720 ~ 4851002 (-) True G132759
TU166444 lncRNA downstream 494639 4811547 ~ 4811858 (-) True G132747
TU166732 lncRNA upstream 302370 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 378559 5707283 ~ 5793845 (-) False G133032
TU166818 lncRNA upstream 404370 5733094 ~ 5758860 (-) False G133032
TU166824 lncRNA upstream 404370 5733094 ~ 5733877 (-) False G133032
TU166875 lncRNA upstream 525213 5853937 ~ 5854156 (-) True G133076
AMCG00011810 mRNA downstream 87441 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011811 mRNA downstream 156284 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011809 mRNA downstream 172953 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011802 mRNA downstream 498808 4805890 ~ 4807689 (-) True AMCG00011802
AMCG00011797 mRNA downstream 526007 4778329 ~ 4780490 (-) True AMCG00011797
AMCG00011818 mRNA upstream 32613 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011822 mRNA upstream 73921 5402645 ~ 5460948 (-) True AMCG00011822
AMCG00011821 mRNA upstream 199559 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011827 mRNA upstream 307397 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011825 mRNA upstream 314989 5643713 ~ 5646448 (-) True AMCG00011825
TU166568 other downstream 159692 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 301888 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 712048 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 814184 4483266 ~ 4492313 (-) False AMCG00011792
TU166383 other downstream 829518 4474605 ~ 4476979 (-) False G132693
TU166801 other upstream 372362 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 378559 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 389854 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 412489 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 412489 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile