RNA id: AMCG00011821


Basic Information

Item Value
RNA id AMCG00011821
length 756
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00011821
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5528283 ~ 5529716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGTGAGCAGTTCAGCTCCCCTGTGGCTAGAAGACCACTCCCTGAAAAGGATCTGCCAGCGCTTCGTAGACAGACCCCACTACGCCACCCTGTACGACACGGCCAACCACATCCCGGTCTACTCAGCGTACTCCTTCAAACGATCTGACGGGGCCAAGCGTGTCGATGTGCTGTGGATGTTTGAGCCACAGCTGGCCCAGGACAAAATGCAGCCCTTTCCCCAGGGTGACTATCACCAGAACTTTGAGGACACGCAGGCCGTTCTTAGTGACTACATCTATGCGTTCTCCTTCGAAAGAGGTCAGCTGAACCTGGACCCGCACCAAGCCAACCCGAATGATAAAGCCGCCACTTACACTCTTACTAACATTGTACCGCAAGTCAGGGAGTTCAATATCGGCCCCTGGGCTCAGCACAAGAACATGATCAGAATGCGGCTCAATAACTACTGCAGGGGCACGGCTAATGTTGTAACTGGAGTGACGCCTTCAGGGAACATGATCCGAAGGAATGAAGTGGCCAGGGTGGCCATCCCAAAGTACATGTGGTCGGCCTACTGTTGCACCAACTATGACAGAAACGCCCCCAACAGCGCAAAGTGCAAGTTCCCTGCCCACGCGGCTTATGGGCTGAATGCAAGAACGGACAATGAAGTGGTGAAACTGACTGTCAAAAGCCTGGAAAACTTTCTGAAGGAGTCCATGTCAGtagataaaaacattcagatttTCTACCACAACTGCATTACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166640 lncRNA downstream 199559 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 202361 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 364472 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 458616 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 508860 5018963 ~ 5019423 (-) True G132819
TU166732 lncRNA upstream 101378 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 177567 5707283 ~ 5793845 (-) False G133032
TU166818 lncRNA upstream 203378 5733094 ~ 5758860 (-) False G133032
TU166824 lncRNA upstream 203378 5733094 ~ 5733877 (-) False G133032
TU166875 lncRNA upstream 324221 5853937 ~ 5854156 (-) True G133076
AMCG00011822 mRNA downstream 67335 5402645 ~ 5460948 (-) True AMCG00011822
AMCG00011818 mRNA downstream 129248 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011812 mRNA downstream 221350 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011810 mRNA downstream 309227 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011811 mRNA downstream 378070 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011827 mRNA upstream 106405 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011825 mRNA upstream 113997 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011832 mRNA upstream 129073 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011833 mRNA upstream 162338 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011831 mRNA upstream 177677 5707393 ~ 5720148 (-) True AMCG00011831
TU166568 other downstream 381478 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 523674 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 933834 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 1035970 4483266 ~ 4492313 (-) False AMCG00011792
TU166383 other downstream 1051304 4474605 ~ 4476979 (-) False G132693
TU166801 other upstream 171370 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 177567 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 188862 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 211497 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 211497 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile