RNA id: AMCG00011822


Basic Information

Item Value
RNA id AMCG00011822
length 2249
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00011822
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5402645 ~ 5460948 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaatgtggaaaaaatggcTTTATAtactaaatctggaaaaaaatacaagatttaagttaaatctgaaaaaacacacttgaaaaaagtgtgcgctgttttacaGACTCTCCACCACAGACTATGTATCTTGTGCTGTCATTACTGGACCCTGGTTAATACCAGAAATACCAGAAATACTTAATTTTGATCAGTCATATAACAATATGTTACTGTACGTGTTTAACATCCAGAACACTCCCACAAACGGCATGGTGgtgtttgatatatttaatcccacacatgcaaacatttgcaactgttgtcaagACTGAGCtcttttgcatttgaaaatgggCTTCTTTTATCACCCTTGTCTCTATCATCTCCTATCAATGCGGCCCAGAAGGCTGCCAttaggggtggggggagcaggTAGAGGTGATTTGCATACCGAGGAATGATAATGGTCCTTGACACCAACAATGCAGCCCTGTAGCATGAGCAGTCCGGGTCAGTGCTTTACCACAAGAAAGAGGTAGTCAACTTCATTTCTCAACATGGAGTTTTCTTGCATGTTTGTCTCGCTGCTCCTGGGGCTCCATGCTCTTGCTGTGGTCAGAGCCAGTGTGGGGGGAACCTTTGACGACTGCGAGCAATTCATGTACAAGGGCACGGCTCCCCTGTGGCTGGAAGACCACTCCCTGAAAAGGATCTGCCAGCGCTTCGCAGACAGACCCCGCTACGCCACCCTGTACGACACGGCCAACCACATCCCAGTCTACTCAGCGTACTCCTTCAAACGATCTGACGGTGCCAAGCGTGTCGATGTGCCGTGGATGTTTGAGCCACAGCTGGCCCAGGACAAAAGCAGGAGTGAAATGCAGCCCTTTCCCCAGGGTGATTATCACCAGAACTTTGAGGACACGCAGGCCATTCTGAGTGACTATATCTATGCGTTCTCCTTCGAAAGAGGTCAGCTGAACCCGGACCCACACCAAGCCGACCCGAATGATAAAGCCGCCACTTACACTCTCACTAACATTGTACCGCAAGTCAGGGAGTTCAATATCGGCCCCTGGGCTCAGCACGAGAACATGATCAGAATGCGGCTCAATAACTACTGCAGGGGCACGGCTTATGTTGTTACCGGGGTGACGACTTCAGGGAACATGATCCGAAGGAATGAAGTGGCCAGGGTGGCCATCCCAAAGTACATGTGGTCAGCCTACTGTTGCACCAACTATGACAGAAATGCCCCCAACAGCGAGAAGAGCAAGTTCCCTGCCCACGCGGCTTATGGGCTGAATGCAAGAACGGACAATGAAGTGGTGGAACTGACTGTCAAAGGCCTGGAAAACTTTCTGAAGGAGTCCATGTCAagagacagctgtAGTTCTGTGGGCAGCAAAGCAATGGCAGCTCTTCTCCTCTTGGTGTTATACACAGTTTTGTTGGTGGAGGCCAGTGTGGTGGAGGACTTTAGGGAGTGCAGACAGTTCTTATACAAGGGCACATCCCCAATGGGGATCCTTGGTGAGAACCTCAGGAAAATCTGCCAACACTATGCCAATGTACCGCGCTATGCGACCCTGTACGACGCGCAGCAACACATCCCGGTCTATTCTGCCTACACCTTCAAGAAATCAAACGGGGAGAAACGAGAGGATTACCCTTGGATGTACGAGCCACAGAACTTCGAGGACTCGCAGGCCGTTTTGAATGACTACGCAGATGTGGCTTTGTACGAGAGGGGCCAACTCAACCCAGACCAGCACCAGGCGGAGCCCAATGACAAGGCTGCCACTTACTCCCTCACGAATGTTGTGCCACAGGTCAGGGAGTTCAATATCGGCCCGTGGTTTAAGCACGAAGACAGAGTGAGGAGAAGGCTGAACAACTACTGTCGAGGCCAGGCCTATGTTGTCACTGGGGTAACTACCTCTGGGAATATGATCCGCAGGGCTAATATAGACAGGGTAGGTATCCCAGAGTATATGTGGACAGCTTACTGCTGCACCGATTACGACAAAAATGCCCCTTTTTACGTGAGATATAAATTCCCCTCCTTCGCTGCTTATGGTCTCAATGACAGGGTCAACAACCACGTGGTAGAGTTGCCTGTTAAAAGactagaaaatGGAAATGCAGCCGCGTCGACCACTGCAGCTGGATCCTCCGAGTGGGGGCTGTTTTCCAGTAACCCAGACCAGCGCCCCTCGGCCAAACGGGCCCAGCAGGACTGCAGGTATGAGGGGAGAAAGCAGGACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166640 lncRNA downstream 73921 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 76723 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 238834 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 332978 5040983 ~ 5069667 (-) True G132833
TU166525 lncRNA downstream 383222 5018963 ~ 5019423 (-) True G132819
TU166732 lncRNA upstream 170146 5631094 ~ 5631526 (-) True G132977
TU166819 lncRNA upstream 246335 5707283 ~ 5793845 (-) False G133032
TU166818 lncRNA upstream 272146 5733094 ~ 5758860 (-) False G133032
TU166824 lncRNA upstream 272146 5733094 ~ 5733877 (-) False G133032
TU166875 lncRNA upstream 392989 5853937 ~ 5854156 (-) True G133076
AMCG00011818 mRNA downstream 3610 5361337 ~ 5399035 (-) True AMCG00011818
AMCG00011812 mRNA downstream 95712 5302359 ~ 5306933 (-) False AMCG00011812
AMCG00011810 mRNA downstream 183589 5166168 ~ 5219056 (-) True AMCG00011810
AMCG00011811 mRNA downstream 252432 5142470 ~ 5150213 (-) True AMCG00011811
AMCG00011809 mRNA downstream 269101 5127605 ~ 5133544 (-) True AMCG00011809
AMCG00011821 mRNA upstream 67335 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011827 mRNA upstream 175173 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011825 mRNA upstream 182765 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011832 mRNA upstream 197841 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011833 mRNA upstream 231106 5692054 ~ 5696144 (-) True AMCG00011833
TU166568 other downstream 255840 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 398036 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 808196 4593693 ~ 4594449 (-) True G132712
TU166389 other downstream 910332 4483266 ~ 4492313 (-) False AMCG00011792
TU166383 other downstream 925666 4474605 ~ 4476979 (-) False G132693
TU166801 other upstream 240138 5701086 ~ 5703917 (-) True G133026
TU166823 other upstream 246335 5707283 ~ 5709533 (-) False G133032
TU166828 other upstream 257630 5718578 ~ 5720981 (-) False AMCG00011831
TU166829 other upstream 280265 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 280265 5741213 ~ 5760549 (-) False AMCG00011845

Expression Profile