RNA id: TU166828


Basic Information

Item Value
RNA id TU166828
length 749
RNA type TUCP
GC content 0.54
exon number 8
gene id AMCG00011831
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5707393 ~ 5720981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCATCTGAAGGGCCAAGACAGTCTGTGCTGATTTCTCTATAGGACTACACAACACAAGGTTTAAACCATGTCTGATATGTCGGAGTTCGGGACTGCGGCTTCCTTCCTGCGCAAGTCCGACAAGGAGCGCCTGGAGGCTCAGACGCGCCCCTTCGACATGAAGAAGGAGTGCTTCGTGCCCGACCCTGTGGAGGAGTTTGTCAAGGCCTCCATCACCAGCCGTGACGGGGACAAAGTCACCGTCCAGACAGAGGGTGGAAAGACTGTCACTGTGAAGGATTGTGATGTCCACCCTCAGAACCCACCCAAGTTCGATAAAATAGAGGACATGGTCATGTTCACCTTCCTGCACGAGCCCGCTGTGCTATACAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTACACCTACTCAGGGCTGTTCTGCGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTACAACTCAGAGGTGGTCAATGCCTACAGGGGCAAGAAGAGAAATGAGGCCCCCCCTCACATCTTCTCCATCTCTGACAACGCCTATCAGTACATGCTGACAGACCGGGAAAACCAGTCAGTCCTGATCACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACCAAGAGAGTCATCCAGTACTTTGCCAGTATCGCAGCCTCAGGGGGCAAGAAGGACCAAGCTGCCTCCAACAAGGGCACCCTGGAGGATCAAATCATCCAGGCCAACCCGGCCCTGGAGGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166732 lncRNA downstream 87052 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 389854 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 392656 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 554767 5162185 ~ 5163811 (-) True G132862
TU166545 lncRNA downstream 648911 5040983 ~ 5069667 (-) True G132833
TU166818 lncRNA upstream 12113 5733094 ~ 5758860 (-) False G133032
TU166824 lncRNA upstream 12113 5733094 ~ 5733877 (-) False G133032
TU166875 lncRNA upstream 132956 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 135682 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 139415 5860396 ~ 5860689 (-) False AMCG00011842
AMCG00011833 mRNA downstream 22434 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 37972 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 72130 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011827 mRNA downstream 80462 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011821 mRNA downstream 188862 5528283 ~ 5529716 (-) True AMCG00011821
AMCG00011843 mRNA upstream 14048 5735029 ~ 5740052 (-) True AMCG00011843
AMCG00011845 mRNA upstream 20780 5741761 ~ 5745172 (-) True AMCG00011845
AMCG00011849 mRNA upstream 29487 5750468 ~ 5758838 (-) True AMCG00011849
AMCG00011844 mRNA upstream 41597 5762578 ~ 5764790 (-) True AMCG00011844
AMCG00011846 mRNA upstream 58508 5779489 ~ 5797225 (-) True AMCG00011846
TU166823 other downstream 9045 5707283 ~ 5709533 (-) False G133032
TU166801 other downstream 14661 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 571773 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 713969 5004165 ~ 5004609 (-) True G132788
TU166404 other downstream 1124129 4593693 ~ 4594449 (-) True G132712
TU166829 other upstream 20232 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 20232 5741213 ~ 5760549 (-) False AMCG00011845
TU166826 other upstream 22378 5743359 ~ 5758860 (-) True G133032
TU166874 other upstream 130899 5851880 ~ 5852590 (-) True G133075
TU166988 other upstream 234306 5955287 ~ 5957925 (-) True AMCG00011860

Expression Profile