RNA id: AMCG00011843


Basic Information

Item Value
RNA id AMCG00011843
length 2169
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00011843
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5735029 ~ 5740052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAAGCTGGCTCAGAGGCTGCAGGATGCAGAGGAGGCTGTGGAGGCTGTGAATGCTAAATGCTCCTCCCTGGAGAAGACCAAACACAGGCTGCAGACCGAGATCGAAGATCTCATGATTGACCTGGAGAGGTCCAACGCAGCCGCTGCCGCTCTGGACAAGAAGCAGAGGAACTTTGACAAGGTCCTGAGCGAGTGGAAGCAGAAGTTTGAGGAGTCGCAGTGTGAGCTGGAGAGCTCCCAGAAGGAGGCCAGGTCCCTGAGCACTGAACTCTTCAAGCTGAAGAACGCTTATGAGGAGTCTCTGGACCACCTGGAGACCCTGAAGAGGGAGAACAAGAACCTACAAGAGGAAATCTCTGACCTGTCTGAGCAACTCGGTGAAGGAGGGAAGACCATCCATGAGCTGGAGAAAGCCAGGAAGCAGATGGAACAGGAGAAGAGTGAGATCCAGTCTGCTCTGGAGGAGGCAGAGGCCTCTCTGGAGCACGAGGAAGGCAAGATCCTGAGAGCCCAGTTGGAGTTCAACCAGGTGAAGGCTGACATGGAGCGCAAGCTGGCTGAGAAGGACGAGGAGATGGAGCAGGCCAAGAGGAACTACCAGAGAGTGGTGGACTCCCTGCAGACCTCTCTGGAGGCAGAGACCCGCAGCAGGAATGAGGCCCTCAGGCTGAAGAAGAAGATGGAGGGAGATCTGAATGAGATGGAGATCCAGCTCAGCCAGGCCAACAGGCAGGCGGCAGAGGCCCAGAAACAGCTGAAGAGCGTGCATGCGAGTCTGAAGGATGCTCAGATTCAGCTGGATGACACCCTGCGCACCAATGATGACCTGAAGGAGAACATCACCATTTTGGAAAGACGCAACAACCTGCTGCTGgcagagctggaggagctgcgcTCCATGGTGGAGCAGACGGACAGAGCCCGCAAGCTGGCTGAGCAGGAGCTGCTGGATGTCAGTGAGAGGGTGCAGCTGCTCCACTCGCAGGCGAAGAACGCGCTGGCCCACGCAGTGCAGTCAGCTCGCCACGACGCCGACCTGCTGAGGGAGCAGTatgaggaggagcaggaggccaAGGCTGAGCTGCAGCGCAGCCTCTCCAAGGCCAACTCTGAGGTGGCTCAGTGGAGAACCAAATACGAGACCGACGCCATCCAGAGGacagaggagctggaggaggcaaAGAAGAAGCTGGCTCAGAGGCTGCAGGACGCAGAGGAGGCTGTGGAGGCTGTGAATGCTAAATGCTCCTCCCTGGAGAAGACCAAACACAGGCTGCAGACCGAGATTGAAGATCTCATGATTGACCTGGAGAGGTCCAACGCAGCCGCTGCCGCTCTGGACAAGAAGCAGAGGAACTTTGACAAGGTCCTGAGCGAGTGGAAGCAGAAGTTTGAGGAGTCGCAGTGTGAGCTGGAGAGCTCCCAGAAGGAGGCCAGGTCCCTGAGCACTGAGCTCTTCAAGCTGAAGAACGCTTATGAGGAGTCTCTGGACCACATGGAGACCCTGAAGAGGGAGAACAAGAACCTGCAAGAGGAAATCGCTGACCTTTCTGAGCAACTCGGTGAAGGAGGGAAGACCATCCATGAGCTGGAGAAAGCCAGGAAGCAGCTGGAACAGGAGAAGAGTGAGATCCAGTCTGCTCTGGAGGAGGCAGAGGCCTCTCTGGAGCACGAGGAAGGCAAGATCCTGAGAGCCCAGTTGGAGTTCAACCAGGTGAAGGCTGACATGGAGCGCAAGCTGGCTGAGAAGGACGAGGAGATGGAGCAGGCCAAGAGGAACTACCAGAGAGTGGTGGACTCCTTGCAGACCTCCCTGGAGTCAGAGACCCGCAGCAGGAATGAGGCCCTCAGGATAAAGAAGAAGATGGAAGGGGACCTGAATGAGATGGAGATCCAGCTCAGCCAGGCCAACAGGCAGGCAGCAGAAGCCCAAAAGCAGCTGAAGTGTGTCCATTCACAGCTGAAGGATGCTCAGATTCAGCTGGATGACTCCCTGCGTGCCAATGATGACCTGAAGGAGAACATCGCCATTTTGGAAAGACGCAACAACCTGCTGCAGgcggagctggaggagctgcgaTCCGTGGTGGAGCAGACGGACAGAGCCCGCAAGCTGGCTGAGCAGGAGCTGCTGGATGTCAGTGAGAGGGTGCAGCTGCTCCACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166824 lncRNA downstream 1152 5733094 ~ 5733877 (-) False G133032
TU166732 lncRNA downstream 103503 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 406305 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 409107 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 571218 5162185 ~ 5163811 (-) True G132862
TU166875 lncRNA upstream 113885 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 116611 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 120344 5860396 ~ 5860689 (-) False AMCG00011842
TU166884 lncRNA upstream 121072 5861124 ~ 5865887 (-) False AMCG00011842
TU166959 lncRNA upstream 156687 5896739 ~ 5897003 (-) True G133147
AMCG00011831 mRNA downstream 14881 5707393 ~ 5720148 (-) True AMCG00011831
AMCG00011833 mRNA downstream 38885 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 54423 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 88581 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011827 mRNA downstream 96913 5636121 ~ 5638116 (-) True AMCG00011827
AMCG00011845 mRNA upstream 1709 5741761 ~ 5745172 (-) True AMCG00011845
AMCG00011849 mRNA upstream 10416 5750468 ~ 5758838 (-) True AMCG00011849
AMCG00011844 mRNA upstream 22526 5762578 ~ 5764790 (-) True AMCG00011844
AMCG00011846 mRNA upstream 39437 5779489 ~ 5797225 (-) True AMCG00011846
AMCG00011840 mRNA upstream 62243 5802295 ~ 5810650 (-) True AMCG00011840
TU166828 other downstream 14048 5718578 ~ 5720981 (-) False AMCG00011831
TU166823 other downstream 25496 5707283 ~ 5709533 (-) False G133032
TU166801 other downstream 31112 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 588224 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 730420 5004165 ~ 5004609 (-) True G132788
TU166829 other upstream 1161 5741213 ~ 5760287 (-) False AMCG00011845
TU166831 other upstream 1161 5741213 ~ 5760549 (-) False AMCG00011845
TU166826 other upstream 3307 5743359 ~ 5758860 (-) True G133032
TU166874 other upstream 111828 5851880 ~ 5852590 (-) True G133075
TU166988 other upstream 215235 5955287 ~ 5957925 (-) True AMCG00011860

Expression Profile