RNA id: AMCG00011845


Basic Information

Item Value
RNA id AMCG00011845
length 879
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00011845
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5741213 ~ 5760549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGACGCTCAAATGGCGGAGTTCGGGCCCGCTGCCTCTTACCTGCGCAAGTCCGACAAGGAGCGCCTGGAGGCTCAGACGCGCCCCTTTGACATGAAGAAGGAGTGCTTTGTGCCCGACACTGTGGAGGAGTTTGTGAAGGCCTCTATCACCAGCCGTGACGGGGACAAAGTAACCGTCCAGACGCAGGGCGGAAAGAACGTCACTGTGAAGGAGTGTGATGTCCACCCTCAGAACCCGCCCAAGTTCGACAAGATCGAGGACATGGCCATGTTCACCTTCCTGCACGAGCCCGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTACACCTACTCAGGGCTGTTCTGCGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACGACAGTGTGGTGGTCAATGCCTACAGGGGCAAGAAGAGGAGTGAAGCTCCTCCTCACATCTTCTCCATCTCTGACAATGCCTATCAGTACATGCTGTCAGACAGAGAAAATCAGTCCATCTTGATCACCGGAGAATCTGGTGCTGGGAAGACTGTGAACACCAAGAGAGTCATCCAGTACTTTGCCAGCATCGCTGCAGTCAGTGGGAAGAAGGACCAAGCTGCCTCCAACAAGGGCACCCTGGAGGATCAAATCATCCAGGCCAATCCGGCCCTGGAAGCTTTTGGTAACGCCAAGACTGTGAGGAATGACAACTCCTCGCGATTCGTGTACTACTCTGTCGGTGCTCTGTCCAAGTCAGTGTATGAGAAGATGTTCCTCTGGATGGTGGTGAGAATCAACCAGTCTCTGGACACCAAGCAGCCTCGCCAGTACTTCATCGGTGTGCTGGACATTGCTGGCTTTGAGATCTTCGAC

Function

GO:

id name namespace
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166824 lncRNA downstream 7884 5733094 ~ 5733877 (-) False G133032
TU166732 lncRNA downstream 110235 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 413037 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 415839 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 577950 5162185 ~ 5163811 (-) True G132862
TU166875 lncRNA upstream 108765 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 111491 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 115224 5860396 ~ 5860689 (-) False AMCG00011842
TU166884 lncRNA upstream 115952 5861124 ~ 5865887 (-) False AMCG00011842
TU166959 lncRNA upstream 151567 5896739 ~ 5897003 (-) True G133147
AMCG00011843 mRNA downstream 1709 5735029 ~ 5740052 (-) True AMCG00011843
AMCG00011831 mRNA downstream 21613 5707393 ~ 5720148 (-) True AMCG00011831
AMCG00011833 mRNA downstream 45617 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 61155 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 95313 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011849 mRNA upstream 5296 5750468 ~ 5758838 (-) True AMCG00011849
AMCG00011844 mRNA upstream 17406 5762578 ~ 5764790 (-) True AMCG00011844
AMCG00011846 mRNA upstream 34317 5779489 ~ 5797225 (-) True AMCG00011846
AMCG00011840 mRNA upstream 57123 5802295 ~ 5810650 (-) True AMCG00011840
AMCG00011847 mRNA upstream 66803 5811975 ~ 5818663 (-) True AMCG00011847
TU166828 other downstream 20780 5718578 ~ 5720981 (-) False AMCG00011831
TU166823 other downstream 32228 5707283 ~ 5709533 (-) False G133032
TU166801 other downstream 37844 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 594956 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 737152 5004165 ~ 5004609 (-) True G132788
TU166874 other upstream 106708 5851880 ~ 5852590 (-) True G133075
TU166988 other upstream 210115 5955287 ~ 5957925 (-) True AMCG00011860
TU167012 other upstream 247242 5992414 ~ 5993018 (-) True G133183
TU167038 other upstream 333198 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 480348 6225520 ~ 6227193 (-) False AMCG00011886

Expression Profile