RNA id: TU166829


Basic Information

Item Value
RNA id TU166829
length 641
RNA type TUCP
GC content 0.54
exon number 6
gene id AMCG00011845
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5741213 ~ 5760549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCAGTGCCGTCAGCCTCCGCCTGCTCCTCTCGCTGCTTCTGCTTGAACTTCATGTTGCCAAAGTGCATGATGGCACCGGTCAGCTTGTAAATACTGTTCTTCTCCTCCTGAGTGAAGCCCAGCAGAAGCAGCGAGAGGAGCAGGCGGAGGCTGACGGCACTGAGGATGCTGACAAGGCTGCCTACCTCATGGGCCTCAACTCTGCTGACCTCATCAAAGGTCTGCTTCACCCCAGGGTCAAAGTGGGGAATGAGTGGGTCACCAAGGGGCAGAATGTCCAGCAGGTGTACTACTCTGTCGGTGCTCTGTCCAAGTCAGTGTATGAGAAGATGTTCCTCTGGATGGTGGTGAGAATCAACCAGTCTCTGGACACCAAGCAGCCTCGCCAGTACTTCATCGGTGTGCTGGACATTGCTGGCTTTGAGATCTTCGACTTCAACACCTTCGAGCAGCTGTGCATCAACTTCACCAATGAGAAGCTGCAGCAGTTCTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAGGGCATTGAGTGGGAGTTCATTGACTTCGGCATGGACCTGCAGGCCTGCATTGACCTCATTGAGAAGCCCATGGGTATCATGTCCATCCTTGAAGAGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166824 lncRNA downstream 7336 5733094 ~ 5733877 (-) False G133032
TU166732 lncRNA downstream 109687 5631094 ~ 5631526 (-) True G132977
TU166640 lncRNA downstream 412489 5306497 ~ 5328724 (-) True AMCG00011812
TU166644 lncRNA downstream 415291 5290174 ~ 5325922 (-) False AMCG00011812
TU166578 lncRNA downstream 577402 5162185 ~ 5163811 (-) True G132862
TU166875 lncRNA upstream 93650 5853937 ~ 5854156 (-) True G133076
TU166879 lncRNA upstream 96376 5856663 ~ 5857165 (-) True G133080
TU166883 lncRNA upstream 100109 5860396 ~ 5860689 (-) False AMCG00011842
TU166884 lncRNA upstream 100837 5861124 ~ 5865887 (-) False AMCG00011842
TU166959 lncRNA upstream 136452 5896739 ~ 5897003 (-) True G133147
AMCG00011843 mRNA downstream 1161 5735029 ~ 5740052 (-) True AMCG00011843
AMCG00011831 mRNA downstream 21065 5707393 ~ 5720148 (-) True AMCG00011831
AMCG00011833 mRNA downstream 45069 5692054 ~ 5696144 (-) True AMCG00011833
AMCG00011832 mRNA downstream 60607 5658789 ~ 5680606 (-) True AMCG00011832
AMCG00011825 mRNA downstream 94765 5643713 ~ 5646448 (-) True AMCG00011825
AMCG00011844 mRNA upstream 2291 5762578 ~ 5764790 (-) True AMCG00011844
AMCG00011846 mRNA upstream 19202 5779489 ~ 5797225 (-) True AMCG00011846
AMCG00011840 mRNA upstream 42008 5802295 ~ 5810650 (-) True AMCG00011840
AMCG00011847 mRNA upstream 51688 5811975 ~ 5818663 (-) True AMCG00011847
AMCG00011848 mRNA upstream 65749 5826036 ~ 5833355 (-) True AMCG00011848
TU166828 other downstream 20232 5718578 ~ 5720981 (-) False AMCG00011831
TU166823 other downstream 31680 5707283 ~ 5709533 (-) False G133032
TU166801 other downstream 37296 5701086 ~ 5703917 (-) True G133026
TU166568 other downstream 594408 5142465 ~ 5146805 (-) False AMCG00011811
TU166493 other downstream 736604 5004165 ~ 5004609 (-) True G132788
TU166874 other upstream 91593 5851880 ~ 5852590 (-) True G133075
TU166988 other upstream 195000 5955287 ~ 5957925 (-) True AMCG00011860
TU167012 other upstream 232127 5992414 ~ 5993018 (-) True G133183
TU167038 other upstream 318083 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 465233 6225520 ~ 6227193 (-) False AMCG00011886

Expression Profile