RNA id: AMCG00011857


Basic Information

Item Value
RNA id AMCG00011857
length 3075
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00011857
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5981093 ~ 5986961 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGTTCGCGTTGTgatgtgattattttttcaatgtcttAACTTGAACATGAGGACGATTGATCGTTTCCTGgcatatgtgtaaatataaagtCCACTTGCTTTTATCCCGCTTACCGTGACCGCTGACAGGGTCCCACAAGACAATCCACTACAGTACTACACAATACATAGGGAAGACTCCACCTCGTATCCAGACACTCGCAATGAGAGACTGAGACAATTTAACAGAATTGTCTTTAGTCTCTTTACTGCACTGcaacagagagtgagagaagtcagtgaaagcagagagaaagagagagatggggggcgAGACCAAGTTGAAAGGCGGgaaggacaaagagagagggaggaagagcgGGAAGAAGGGTGGTGGAGCAAGGCAGGATCGGGGGAGTAAACAGTGGCCGCGGCTGGACAATCTCAGCGTGGGGTATTTCCGCAGGGTGAACGACAGGCTGGAAGAGGCGTTCGGCCCTAAAGAGGAGATGgACATGTTCGTGGAGAATGTCTTATCTGAGATCAAGGGGCGGGCTGCCATTGTGGCCACAGACATGATTGGCAGTGTGACCCTACAGAAGCTCCTCCCCCTGGCCAGCCCTGCCCAGGTGGGAGGGGTCCTGGCCGAGCTGGGGGGCGACTCGGGGGCGGAGTTCGCCGCCGTGTCATGTGACCGGTGTGGGGCGCACGTCCTAGAGAGCGCGCTCAGACAGGCTCACAGACTGACAGGGGATGGTGGGAAAGCGGAGGACCAGGAAGCTGCCTCAGAGGCGGAGGGTGCTGCCCAGGGCGGGTGTGAGGTTCTGGAGGAGCAGCTGCTGTTGCTGAGCAATGCGGTGATGGACAGGCTGACGGAGGTCGCCCGGGACACCCACGGGACGTTCGTGGCTCGCAGGATCGCCATGACGCTGGCAGGATCACTCGGGCACAGCGACCGAAAGACAGCGCCTCACCCAGGGCATGATGCAATACCTGACGACTCTCGGCGCTGCACCCGGGACGAGGACCAGACATCCAGCCGCCTCCTGGAGACCCTCATCACCGTGTCCCAAAAGTCCCAGCTCCGCGACCTCTACAAGAACCACTTCCGGGGTCACCTGTTCCTGAAGATTTTTGACGAGCTGTTAGAGGGTCTGGAAGCCATCTTGGCGGCGGGTCACATGGGTGTCATCGTCCAATTAGCGGAGAGCTGCGTCAGAAAGGAGGAGCGGCAGTCCCAGATGATGCAAAGCCTACTGGAGGTTCGGAGGAATCATTGCAGCACACACcgCCCCCTCTCTGGAGTGACGTATCACGGCTCCTGCCTCGTCCAGTCACTGCTCTCCTACTCAGACAGCTCCGTCCTCCAGGTCTCCCTCAGGGCCCTGCCCCCCAGCGACCTCCTGACCCTGGCAACCGACCAGTCGGGGAGCCACGTGCTGGAGGCTCTGGTGACGTCGCTGACCGAGAAGGGGAGGATCAAAATGCTGAGGAGGCTGAAGggtgtcTACGTGCAGATGGCGTGCTCTAAGTTTGGCAGTCGTGCTCTGGAGAGTGTGTGGAGCAGCGCGTCCCTCAGGACAAGGCAGGGCATCGCACAGGAACTGGtggGCAGCAAGGCCACCCTCAGGTCAGACCAGTTCGGTCACCACGTGTTCCGGAACTTCGCCCTGACTCACTTCCTGAAGAGGCGGGACCAGTGGGAGGAGCTCCAGACAGCCCAATCCAAGAAGAGAATGATgttcagtgacattttaaagtgacGGGAGatatcttttgtatttttattctaattttTTCTGTCTGCAGATCTGTTTCTATAATAAGTCATAATAACCAGTCTAAGAACAAACAATTATGTCTCACTGTGTCTGTTACttgtgtatataattttatttcgCATAGACTGTCcagcattttatatattaatcacATTCTCTCGCACACCCACACGCCTCAGTCAGGGTTCAAGCGATGGCATCGCTGTGGCTCATTGCATACTTGCGTTGATGTTTATTTGGTCTTACAAATACAAGAGTGGTTTGAAATTCCAGTGTCTAATATTAATACAGCATTAAAACGatcaacaacagaaataaacaggaCTGGACTCGTTTCCACAGTCCCCAGGCCCCTTTCCAAAACCATACAGCTCTTGCCATTATCTCCTGAACGACAACACGGCGAGATCAAAGCCACCATCTTGGCCAGGGGCGTAACCATCCTCCTCCGTCGAATTCCGATTGTGCGTTATGTCCGTTTTCCGTTGCTGTTGTCGGCTGTCCCGTTCCCCGTCACACGTTCCCATTGGCGGGCGAGGCCAGTTCGGCGATCTTGGCGTTCAGCTCCTGATTGGTCCAGTCCCTCCTGATGTCGTCCAGGTGGCTGTCGAAATCGACCAAGAGGTTGTGGGTCCCGGACGCCAGCAGCTCATTGGCTATCGCCCGCGTCTGCTCCCAGTGGCGCAGCATGATCTGTTGTTTGTCCTTCAGTGTCCAGTGTCCGTCCCTCCTCTCGTACACCACAATGGGCGGCAGTCTCTCTTGCATGGACATCTTGGCACTCTGCACCTACACACAaggAACTGCATTACTGTAGTGCTCTGCAATCTTATCTGCAATCTTCACTGCACACGGAgtgggactGCTGTCAGTCATGCTAGCATTGGCCTGGTAGTATCCCACAATCCTCAGCTTCTTCTGTGCGCACCACACATCCAcCTGCTGCAGGGCGAGCTCGGTGATGGGGGCGAGGGGCAGGCGGGAGTGCAGCAGGGGCACGCAGTCCGACACGCACACGGATCCCCCCTGAGGCCCCGGGGACAGGAGCAGCCCGTTCACAGAGCATGCTGGGAAGCGTCCGGCATGCAGGAACATCTTCACATAGCTCATACAGGAGAGCTCCACCTCCatcgCGGATGTCTGTCTGCGGTCACAGCTGTATCAGAGCGACAATGTGACGAAGTCTCGGCGATCCAGCTGTGAAGTCACCGGCGCCATTAAACCCAACACAGAGCCGCAACACTGTATCAGCCTCCAGAACCCCCGAGATCTGCCCGGCAACAGCGGCGGCTTCCCGGATTGCtattggctg

Function

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166974 lncRNA downstream 7713 5925629 ~ 5973380 (-) True G133156
TU166959 lncRNA downstream 84090 5896739 ~ 5897003 (-) True G133147
TU166884 lncRNA downstream 115206 5861124 ~ 5865887 (-) False AMCG00011842
TU166883 lncRNA downstream 120404 5860396 ~ 5860689 (-) False AMCG00011842
TU166879 lncRNA downstream 123928 5856663 ~ 5857165 (-) True G133080
TU167008 lncRNA upstream 2153 5989114 ~ 5990502 (-) True G133180
TU167009 lncRNA upstream 5353 5992314 ~ 6035898 (-) True G133181
TU167015 lncRNA upstream 11647 5998608 ~ 5999229 (-) True G133186
TU167022 lncRNA upstream 28949 6015910 ~ 6016951 (-) True AMCG00011868
TU167010 lncRNA upstream 49066 6036027 ~ 6038712 (-) True AMCG00011867
AMCG00011860 mRNA downstream 23634 5954630 ~ 5957459 (-) False AMCG00011860
AMCG00011859 mRNA downstream 34173 5940650 ~ 5946920 (-) True AMCG00011859
AMCG00011856 mRNA downstream 41900 5936640 ~ 5939193 (-) True AMCG00011856
AMCG00011858 mRNA downstream 88013 5889044 ~ 5893080 (-) True AMCG00011858
AMCG00011842 mRNA downstream 109093 5860509 ~ 5872000 (-) True AMCG00011842
AMCG00011868 mRNA upstream 29825 6016786 ~ 6017080 (-) False AMCG00011868
AMCG00011866 mRNA upstream 34752 6021713 ~ 6028050 (-) True AMCG00011866
AMCG00011867 mRNA upstream 48958 6035919 ~ 6040630 (-) False AMCG00011867
AMCG00011871 mRNA upstream 67123 6054084 ~ 6057440 (-) True AMCG00011871
AMCG00011870 mRNA upstream 70532 6057493 ~ 6063479 (-) True AMCG00011870
TU166988 other downstream 23168 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 128503 5851880 ~ 5852590 (-) True G133075
TU166831 other downstream 220544 5741213 ~ 5760549 (-) False AMCG00011845
TU166829 other downstream 220806 5741213 ~ 5760287 (-) False AMCG00011845
TU166826 other downstream 222233 5743359 ~ 5758860 (-) True G133032
TU167012 other upstream 5453 5992414 ~ 5993018 (-) True G133183
TU167038 other upstream 91409 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 238559 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 264985 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 374430 6361391 ~ 6363728 (-) True G133291

Expression Profile