RNA id: AMCG00011860


Basic Information

Item Value
RNA id AMCG00011860
length 441
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00011860
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5954630 ~ 5957925 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCCGCACGGTGAGTCTGGGCTCTGGGTTCATCTTTGGGTTTATTGTGCAACAAGCACAGGAGGGATGGTGGAGGCCGAAAGAGGGCAGAGAGGGTGAGATGGACAGGAAgacaaaggaaggaaaagccCCGTGTCATGCTGCTGGGCCCcacagtctgtctctctccttctctcagacactccctccctccttcactCAGACTCACAAACTGAAAGTGGAGACCTTCAGGGTGTCGCTGTTTCAACAGGCAGACCAGCTGTTCTCGGAGCGGATCCCCCTGAAGATCATCCAACTGGACAACCTGCTGAAGgatgaTGTGATGAACGCCAATGAGAAGATCACCACCCTGCTGGACAGAGTAAAGCCTGAAGTCAGGGAGCTGAAGGAGACATGCATactgtACTATTTTCTTCTCAGGTCTCCTACTGTGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166959 lncRNA downstream 57627 5896739 ~ 5897003 (-) True G133147
TU166884 lncRNA downstream 88743 5861124 ~ 5865887 (-) False AMCG00011842
TU166883 lncRNA downstream 93941 5860396 ~ 5860689 (-) False AMCG00011842
TU166879 lncRNA downstream 97465 5856663 ~ 5857165 (-) True G133080
TU166875 lncRNA downstream 100474 5853937 ~ 5854156 (-) True G133076
TU167008 lncRNA upstream 31655 5989114 ~ 5990502 (-) True G133180
TU167009 lncRNA upstream 34855 5992314 ~ 6035898 (-) True G133181
TU167015 lncRNA upstream 41149 5998608 ~ 5999229 (-) True G133186
TU167022 lncRNA upstream 58451 6015910 ~ 6016951 (-) True AMCG00011868
TU167010 lncRNA upstream 78568 6036027 ~ 6038712 (-) True AMCG00011867
AMCG00011859 mRNA downstream 7710 5940650 ~ 5946920 (-) True AMCG00011859
AMCG00011856 mRNA downstream 15437 5936640 ~ 5939193 (-) True AMCG00011856
AMCG00011858 mRNA downstream 61550 5889044 ~ 5893080 (-) True AMCG00011858
AMCG00011842 mRNA downstream 82630 5860509 ~ 5872000 (-) True AMCG00011842
AMCG00011841 mRNA downstream 108098 5844281 ~ 5846532 (-) True AMCG00011841
AMCG00011857 mRNA upstream 23634 5981093 ~ 5986961 (-) True AMCG00011857
AMCG00011868 mRNA upstream 59327 6016786 ~ 6017080 (-) False AMCG00011868
AMCG00011866 mRNA upstream 64254 6021713 ~ 6028050 (-) True AMCG00011866
AMCG00011867 mRNA upstream 78460 6035919 ~ 6040630 (-) False AMCG00011867
AMCG00011871 mRNA upstream 96625 6054084 ~ 6057440 (-) True AMCG00011871
TU166874 other downstream 102040 5851880 ~ 5852590 (-) True G133075
TU166831 other downstream 194081 5741213 ~ 5760549 (-) False AMCG00011845
TU166829 other downstream 194343 5741213 ~ 5760287 (-) False AMCG00011845
TU166826 other downstream 195770 5743359 ~ 5758860 (-) True G133032
TU166828 other downstream 233649 5718578 ~ 5720981 (-) False AMCG00011831
TU167012 other upstream 34955 5992414 ~ 5993018 (-) True G133183
TU167038 other upstream 120911 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 268061 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 294487 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 403932 6361391 ~ 6363728 (-) True G133291

Expression Profile