RNA id: AMCG00011866


Basic Information

Item Value
RNA id AMCG00011866
length 2717
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00011866
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6021713 ~ 6028050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAATTGGTGCCGATCCAGCCGGTCGGTAAAGCCGGGAGAGATACCGCGCCGGCCCGGCATTTCAGCACTAACAACAGGGCGACACACTGGACACCGGCCTGGTTCGGTTCTCTGAAAATCAAACCCCTTTAACTTTTTTCATCTCTTCGTCGTCCATGTCcgctattaatattattactgtgAATTATACAATAGAGCCGTGAGCAGTATTAACTGTCCTGTGACTGCGGTGTTGTTCGAGATAAAGGGTGATGGCGCGGAGGTTGGCCAGGGCTGGGGGCGCTCTGCTGTGGCTGGTCTTGTTCACTCGAGTCCGGGGCTCCGGGGCCTCCGCCGCCGCATTTGTCGCTTGTCACGACGCATACATTGAGGTCCGCTTCCCGCAGAGCGCCCGCACCTCCACTGTCAAAATCCTGGCTAGTAACTGCATTgagAAGGGCAGATTCCTCTTCACTCTACAGGTGTCCGACCAAGCCGGCGTCCTCTCCAACATCACCGTCTCCTGTCGCCATGACAACCAGCTCTCGAAAACCTATCGGAGTTTCCGAATGTTCGGGAGCCTTGGGGTGAGGAAACTCcccagagagagggaagaagaagaagaagaagaagaagaggtggaggaggaggagagagagacagagaagtgGTCGTACTTTGTCTCCAGACCAACAAAACACACCACTGTCAGTGATGTCTGGACTTCAGGGATGGAGGGAGTTGGAGAGAGCAGGGAGGAGAAGATGGAGCGtgggatggaggaggaggaggaggaggaggaggaggaggaggaggatgacgaCGACGACAATGATAAGGAAGATGCTCCAGGAGAGAATGAGATGGTGGGagtggagagagaaaaggaggagaGTGGAGGAGAGGGGGGAATGGCTGAGAAGGTGAGGggtagagagagtgagagagagggggaggagaggcaaagggagagagatgcatctggacACATCTGGAGCCACTACTACAGCAGCACCCCTCCAGCAGCTGCACAGCACCTGCCTGCCCCCACAGCTGCACACATCTGGAGCTTGCAGTCTTCCCCGGTAACATCTGGATCCCACACCACCAGCAACACCAATGCAGCAGctgggagagaggaagaggaagaggaggaggaggaggaggaggaggacagagagggagcaGCTGCTGTGTACCCAAGATACCAACTGTCAACAGttggtttgcacatctggagcCACCTGAACACCACCGCTGCTCCCAGACCGGCCCCCACAGCTGGACACCtgtggaggaggggaggaggcaGCAGATGGAGGGGCTGGGGAATGATGGGGAGTGACCTCTGGGTTACCAGGAGGTCGGGGGTCAGGAAGGCAGGCCGCCTCCCCTCTCTGCCCTGCGGACCCCCCAGCATCTCCCGCGGCGCCTGCCTTCTGATTGGCTGCAGCTACCAGCCCGAGACCCACCCCCAGCATTCCTGTCAGTACAGTCAGACAGGTTGTTCTCGCAGTGCCGACGTCATTATCCTGGTTAACCGAACCTCCGTGACTCCGCCCCTCCGGCTGACGGCTGTGCATCTGTCCTGGGGTCAGGGGTCGCCAGAATGTCAGCCCAAGGTCATGACTTCTGACTTGGCCGTGTTCCACTTCCCAGTCCAGTCGTGTGGGAGCGAGAGCGAGGTGCGCTCCGAGGGGGTGTGGTACAGCAGTGAGGTGCAGGCGGAGAGAGAGGTCCTGAGGCAGCCCAAGGGAGCCATCTCCAGAGACGCCCCCTACAGgCTGCTAGTCCGCTGTTTCTATGGTGCCGGTGGTGATGTCTCAGTGGAAACGGTCATCGAGACGCTGCCCAGCATCGCTCCCCTGGTCAAGAACGGAACAATCAGATTCGAGCTGCAGATCGCCACCGatAGTTCTTTCACTTCCTGGTTTGCACCGGCCGACTTCCCCCTGACACGCACACTGGGAGACCCCGTGTTCGTGGAGGTCAGAGTTCACGGCCCCAGTGACCCTGCTGTGGGGCTGATGCTGGAGCAGTGCTGGGTGACCTCCGACCCCCTGCTGACCTCAGGGTCAAAATGGCCTCTGATAGAGAACAGGTGTCCGTACCCAGGGGATAACTATCTGACCATGACCGAACCGGGGGAGAGTGGTCTGGGTGTGCTCCCCTCTGGCCGGCGCCGCTTCTGGTTCCGGATGCTCGCGTTCATGGGGGCACTGACGGACCTGCCGCTGCACTCGCAGgtgtatgtgcagtgcagtgtgtctctgtgctccaGTGTAGAGGACAGCTGCTGGACCCAGTGTCCACAGAGGAGAAAGAGACGGGGTCTCACGCCCTCCCAGGTCCTGGTGTCCTCAAGTGGCTCAGTCTTCTTCCTGCCACCCCCCCGTAGCCTTGCTGACAGTGCCCTCCAAGTGTCGCTGAGTGCTGTGTGCTGGCTGTCCTCCGGGGCTGCAGGGGGCGGTGTGCTGCTGGCGGTGctgtctctgctgtgtgtgctgAGGGCCAGAATGCACCAGCAGTGTCCTGACCACTGACCTCAATAAACACACTGAACTGCACCGCTCTGTGCCTTATTACTGACCCCACGAGTGGCTCTATTACTAATATACTCATTCCTATCCTTACTTGTATTGGTAGCAGCAGTAGATGACTTCATATTATTGCCAGTATCTTTTATATTGATGGCTGTTGGCAGCCGCAGTGACAGTCGGGCAGCGCGGGAGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167022 lncRNA downstream 4762 6015910 ~ 6016951 (-) True AMCG00011868
TU167015 lncRNA downstream 22484 5998608 ~ 5999229 (-) True G133186
TU167008 lncRNA downstream 31211 5989114 ~ 5990502 (-) True G133180
TU166974 lncRNA downstream 48333 5925629 ~ 5973380 (-) True G133156
TU166959 lncRNA downstream 124710 5896739 ~ 5897003 (-) True G133147
TU167010 lncRNA upstream 7977 6036027 ~ 6038712 (-) True AMCG00011867
TU167039 lncRNA upstream 51796 6079846 ~ 6080079 (-) True G133209
TU167094 lncRNA upstream 197470 6225520 ~ 6227193 (-) True AMCG00011886
TU167115 lncRNA upstream 203108 6231158 ~ 6231847 (-) True AMCG00011882
TU167137 lncRNA upstream 243137 6271187 ~ 6330227 (-) False G133277
AMCG00011868 mRNA downstream 4633 6016786 ~ 6017080 (-) False AMCG00011868
AMCG00011857 mRNA downstream 34752 5981093 ~ 5986961 (-) True AMCG00011857
AMCG00011860 mRNA downstream 64254 5954630 ~ 5957459 (-) False AMCG00011860
AMCG00011859 mRNA downstream 74793 5940650 ~ 5946920 (-) True AMCG00011859
AMCG00011856 mRNA downstream 82520 5936640 ~ 5939193 (-) True AMCG00011856
AMCG00011867 mRNA upstream 7869 6035919 ~ 6040630 (-) False AMCG00011867
AMCG00011871 mRNA upstream 26034 6054084 ~ 6057440 (-) True AMCG00011871
AMCG00011870 mRNA upstream 29443 6057493 ~ 6063479 (-) True AMCG00011870
AMCG00011869 mRNA upstream 40098 6068148 ~ 6077058 (-) True AMCG00011869
AMCG00011885 mRNA upstream 85524 6113574 ~ 6123209 (-) True AMCG00011885
TU167012 other downstream 28695 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 63788 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 169123 5851880 ~ 5852590 (-) True G133075
TU166831 other downstream 261164 5741213 ~ 5760549 (-) False AMCG00011845
TU167038 other upstream 50320 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 197470 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 223896 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 333341 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 350048 6378098 ~ 6461788 (-) False G133365

Expression Profile