RNA id: AMCG00011867


Basic Information

Item Value
RNA id AMCG00011867
length 1506
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00011867
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6035919 ~ 6040630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTTCACATTGAGCCAGTTTCCAGACTCTGCCTGCAGTCCTTACCTGATGGTCCGGACATGTGTTCATGGAACGAATCTCCAGGAAGTTAAAGGGGGCACCAATGGAAGGAAGGTCCCGCCTCCCACCCCGCCTCCCATCCCGCCCTCTTCCCTGAAACCTGGACTCGGACAGGGTGAGGTCAGCGTCACTCAAGGCAGTGACAAGGACAGCCCTAACCCCCAGGAGAAGGCCTCGGACAGGAAACCCCCAGTGAAAAAACCCAGAATACCCCAGAATGCCCGGATACGCTCCTTGGATGagccagGCAATGGGAACGTAGCACCTGGAAACAGTGAGGCATCATGACGGCAACGGAACTTGGAAAGGAGTCGTCGCGGCAACGATCACAGCTGGAACATTCCGACTGACTGAACACTCTGTGTTGGGACAGCGagaccgacacacacacacacacacacacacacacacacacacacagacacgacCCAGTCCGTCaggcactgtatgtatattcatatatatgtattaactgtaaagagagagaaagagcgacagagagggagagcgagagggagaatTTATAATTAAGGCCATATATCtatccatatatataaatacatatacacacatataggtGTAtaggacagacagatggacgGACAGACTGACAGGGGTCCTAACACTCCGGCCgcgactgactgactgtgatTGTGGCTCCCTCCGCAGTCTATGGGCCTGTATCTGGATGCCATTCCTCTGCGGGAACGCCAGGGGGCAGTGTGGACACTCCAGAAAATATTGTTTGCTTGATTATGATTAatgtgattatgattattattattattattaagcatatTCCTTTGAAATGAGTAATGAATTATTGGAATAAGTAGTTTGCAAAATTGTATACTActggtcttttttttgtttttgtttttatttagtccATCACCGTGTAACGTTGTATTATATTACTATCACAGTCTATGATATGATATAAATGATGTAAATAAGAGAGTTCTGCAGCTCCAAGGGTGCCTGTTCTGCCAGGAGTGTTATATTGCTGCCCCTGTTCTGTGACAGCAGTGCCCAGCCTGCGACGCCTGCCTGGCTGACTTCCGGCGCTGCTCTGACGCGGGTTCTTTCACGGTTGTGACCGACGCCAGTCACAGTGTCCAGATCGCGCTGTTTCTAGAACCCATGGCGGAGCTCGGCCTGGCAGCGTTGCACTCTGGGAGCATTTGCCGCACAGCTCTCGCACCTCTGCAGCACCACGCCTTCTTCTTTCTACTGTTCgtcttgcattctctctctcctcctctcctcttctctctctgtctatattgaattgtaatatattttctaagctgaataaaagaataaagaGCTGCGGCGAAAGACCGGGTGGGTGTGCCGTTCTGTGTTGTGTTACCGAGACTCACCAGCACactatacaaatattacaattaaatcatttaatgtgaaaaaaaagtactgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167009 lncRNA downstream 21 5992314 ~ 6035898 (-) True G133181
TU167022 lncRNA downstream 18968 6015910 ~ 6016951 (-) True AMCG00011868
TU167015 lncRNA downstream 36690 5998608 ~ 5999229 (-) True G133186
TU167008 lncRNA downstream 45417 5989114 ~ 5990502 (-) True G133180
TU166974 lncRNA downstream 62539 5925629 ~ 5973380 (-) True G133156
TU167039 lncRNA upstream 39216 6079846 ~ 6080079 (-) True G133209
TU167094 lncRNA upstream 184890 6225520 ~ 6227193 (-) True AMCG00011886
TU167115 lncRNA upstream 190528 6231158 ~ 6231847 (-) True AMCG00011882
TU167137 lncRNA upstream 230557 6271187 ~ 6330227 (-) False G133277
TU167131 lncRNA upstream 265717 6306347 ~ 6347713 (-) True G133277
AMCG00011866 mRNA downstream 7869 6021713 ~ 6028050 (-) True AMCG00011866
AMCG00011868 mRNA downstream 18839 6016786 ~ 6017080 (-) False AMCG00011868
AMCG00011857 mRNA downstream 48958 5981093 ~ 5986961 (-) True AMCG00011857
AMCG00011860 mRNA downstream 78460 5954630 ~ 5957459 (-) False AMCG00011860
AMCG00011859 mRNA downstream 88999 5940650 ~ 5946920 (-) True AMCG00011859
AMCG00011871 mRNA upstream 13454 6054084 ~ 6057440 (-) True AMCG00011871
AMCG00011870 mRNA upstream 16863 6057493 ~ 6063479 (-) True AMCG00011870
AMCG00011869 mRNA upstream 27518 6068148 ~ 6077058 (-) True AMCG00011869
AMCG00011885 mRNA upstream 72944 6113574 ~ 6123209 (-) True AMCG00011885
AMCG00011887 mRNA upstream 85967 6126597 ~ 6137761 (-) True AMCG00011887
TU167012 other downstream 42901 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 77994 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 183329 5851880 ~ 5852590 (-) True G133075
TU166831 other downstream 275370 5741213 ~ 5760549 (-) False AMCG00011845
TU167038 other upstream 37740 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 184890 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 211316 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 320761 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 337468 6378098 ~ 6461788 (-) False G133365

Expression Profile