RNA id: AMCG00011868


Basic Information

Item Value
RNA id AMCG00011868
length 252
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00011868
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6015910 ~ 6017080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaGAGAGGAATACCACACTGTCCCAGGGATAGATGGAGGGAGGCACATTGCATTGTTCCAGGGAAAGGGAGTGAGCGTGCACTGTTACTCTGGATGTCACTGGTGTGAACATGAGACGGtGTGTCTCCGAATCCAGATCAACCCTCAGAACAAGAGTGACTTCCTGTCCGTCTCCCCCGAGCGCGCCTTCGCCGACTTCCTGTTCGCCCACACCGTGCTGCACCTGGTGGTCATCAACTTCATCGGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167015 lncRNA downstream 17557 5998608 ~ 5999229 (-) True G133186
TU167008 lncRNA downstream 26284 5989114 ~ 5990502 (-) True G133180
TU166974 lncRNA downstream 43406 5925629 ~ 5973380 (-) True G133156
TU166959 lncRNA downstream 119783 5896739 ~ 5897003 (-) True G133147
TU166884 lncRNA downstream 150899 5861124 ~ 5865887 (-) False AMCG00011842
TU167010 lncRNA upstream 18947 6036027 ~ 6038712 (-) True AMCG00011867
TU167039 lncRNA upstream 62766 6079846 ~ 6080079 (-) True G133209
TU167094 lncRNA upstream 208440 6225520 ~ 6227193 (-) True AMCG00011886
TU167115 lncRNA upstream 214078 6231158 ~ 6231847 (-) True AMCG00011882
TU167137 lncRNA upstream 254107 6271187 ~ 6330227 (-) False G133277
AMCG00011857 mRNA downstream 29825 5981093 ~ 5986961 (-) True AMCG00011857
AMCG00011860 mRNA downstream 59327 5954630 ~ 5957459 (-) False AMCG00011860
AMCG00011859 mRNA downstream 69866 5940650 ~ 5946920 (-) True AMCG00011859
AMCG00011856 mRNA downstream 77593 5936640 ~ 5939193 (-) True AMCG00011856
AMCG00011858 mRNA downstream 123706 5889044 ~ 5893080 (-) True AMCG00011858
AMCG00011866 mRNA upstream 4633 6021713 ~ 6028050 (-) True AMCG00011866
AMCG00011867 mRNA upstream 18839 6035919 ~ 6040630 (-) False AMCG00011867
AMCG00011871 mRNA upstream 37004 6054084 ~ 6057440 (-) True AMCG00011871
AMCG00011870 mRNA upstream 40413 6057493 ~ 6063479 (-) True AMCG00011870
AMCG00011869 mRNA upstream 51068 6068148 ~ 6077058 (-) True AMCG00011869
TU167012 other downstream 23768 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 58861 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 164196 5851880 ~ 5852590 (-) True G133075
TU166831 other downstream 256237 5741213 ~ 5760549 (-) False AMCG00011845
TU166829 other downstream 256499 5741213 ~ 5760287 (-) False AMCG00011845
TU167038 other upstream 61290 6078370 ~ 6079367 (-) True G133208
TU167095 other upstream 208440 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 234866 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 344311 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 361018 6378098 ~ 6461788 (-) False G133365

Expression Profile