RNA id: TU167040


Basic Information

Item Value
RNA id TU167040
length 230
lncRNA type sense_over
GC content 0.61
exon number 2
gene id AMCG00011873
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6084852 ~ 6102011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagaccagactgcactgaccctctctctctctctctctagtggACAACGGTGATCTCCAGTCATTGTCCAGGTCTCTGGATGCTCACAGCCTGCCTGAGCGACTGTCCCAGAGAGagaacacccccacccccactgcaGCACAGAACCTCCGTCCCCCGAGTCTCTGTCTGAGAGGAGCAGGAGAGAGCAGCCTGGTGGACCCATCTGAAGCCCCCAGGAGCAGCGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166957 lncRNA upstream 7467 6067574 ~ 6077385 (+) True G133145
TU166935 lncRNA upstream 48866 5992317 ~ 6035986 (+) True G133129
TU166918 lncRNA upstream 77264 5932822 ~ 6007588 (+) True G133115
TU166938 lncRNA upstream 85621 5998609 ~ 5999231 (+) True G133132
TU166908 lncRNA upstream 177866 5906038 ~ 5906986 (+) False AMCG00011853
TU167088 lncRNA downstream 123287 6224306 ~ 6224519 (+) True G133248
TU167106 lncRNA downstream 157041 6258060 ~ 6260368 (+) False AMCG00011876
TU167109 lncRNA downstream 221747 6322766 ~ 6347706 (+) True G133264
TU167234 lncRNA downstream 465840 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 488397 6589416 ~ 6589658 (+) True G133354
AMCG00011865 mRNA upstream 30847 6053574 ~ 6054005 (+) True AMCG00011865
AMCG00011863 mRNA upstream 33999 6030099 ~ 6050853 (+) True AMCG00011863
AMCG00011861 mRNA upstream 63156 6018215 ~ 6021696 (+) True AMCG00011861
AMCG00011864 mRNA upstream 71742 6003677 ~ 6013110 (+) True AMCG00011864
AMCG00011862 mRNA upstream 89197 5987777 ~ 5995655 (+) True AMCG00011862
AMCG00011872 mRNA downstream 46613 6147632 ~ 6148597 (+) True AMCG00011872
AMCG00011874 mRNA downstream 69050 6170069 ~ 6170866 (+) True AMCG00011874
AMCG00011875 mRNA downstream 140971 6241990 ~ 6243488 (+) True AMCG00011875
AMCG00011876 mRNA downstream 155303 6256322 ~ 6260389 (+) True AMCG00011876
AMCG00011890 mRNA downstream 219983 6321002 ~ 6329996 (+) True AMCG00011890
TU166896 other upstream 196960 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 196960 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 255320 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 323604 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2141490 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 154931 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 382928 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 444369 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1135922 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1404063 7505082 ~ 7508751 (+) True G133667

Expression Profile