RNA id: AMCG00011877


Basic Information

Item Value
RNA id AMCG00011877
length 1938
RNA type mRNA
GC content 0.66
exon number 4
gene id AMCG00011877
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6217174 ~ 6222794 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTGCAAGAGGTGTGTGGGTTCAAGGACACCCCCACCTACCCACGGTGGAATACCccggcctccctctccttgGCCACGGAGCATACCACGCTGTGGCTGGGTGGTGGAGACGGGGGATTCGGTCGTGGCGGTCGTGGCGGTGGTGGCGGCGGTGGtgtgggagggggtgggggcggcTGTCCTCTCTTTCTCTACGTGCCCTGTCCTGAATTCCTGCAGCCTTCTGCTCTGAGGGCCGTGTGCCAGGGCACAGCTCTgcatcattctctctctccctcctcctcctccacctcctctcctcccttccctGCTCCCCACCGCCCCCACTACCTCCCCAACTGCCTCCCttcctccccttccctccctctccccttctccctctcccacgGCACCACCACCCTGGCCTTCTCCTTCCCCGGGGGGGCGGTGATGGCGGCGGACACGCGCTCCAGCTGTGGGGGGCTGGTGGCCTGCCCCGAGACCCAGAAGATGGCACCGATCCACTCCCACATGGTGGCATCGGGCTCGGGAACGGGGGCAGACTGCCAGCTGTGGAAGCGCATCCTGGCCCGCGAGGCGGCGCTGTTCCGGCTGGTGCAGCGTCAGAGGCTGCCAGTAGGGGCTGCTGCTCGCATGCTGAGCCGCATGCTGCAGCCATTCAAGGGCACTGAGCTGTGTGTGGCGCTCACTCTGTGCGGCTGGGACCAGGGGgacgaagaggaggaggaggaagaggaggaagagggggagcaGGAGCAGGGAAGGAAGGTGGAGATGAGGAGGACTAGtggagaggcagaggaggaggagagaggaagccCCCCACccacagagacagggagacgcAAGAGGGGAGGGCCGGCGCTGTGCTACGTGTGCAGTGATGGCAACCTCCTCAAGGGGGAGCTCTTCTCCGTGGGCTCCGGCTCCCCCTACGCCCTCTCCATACTGGACAGGACCCTCGGGGGGCCGGAGGGGGCCATCAGGGGGCCTGGTGATGCGGTCAGCCTGGCCCGGAGGGCAGTGTACCACTCCTCCCACAGGGATGCCTACTCGGGCAACAACGTCGACCTGTACCTGCTGACCCCCCGGGGCTGGAGACACAGGGAAAGAGAGAACCTGAGGGAGGATGTGTTACGCGGTGAGTCGGCGGATTTCTGCAACTTTGCCGAACGGCCCTTTACTTTCGGCTCGGGCATGGACCAGACCGAGCTGGGCTTCGGGTCCACCTCGGGAGACGGACTCAGTTTCTCCGTGAAGGCTCCACTCTACCCCGGGGATGCGATCGGGCCTGAGGAGAAGATCGAGTTTCTTCACGGAACTACCACCCTGGCTTTCAAGTTTGACCATGGCGTGATCGTGGCCGTGGACTCTCGGGCGACGGCGGGCTCATACATCGCGTCCCAGACAGTTAAGAAGGTGATCGAGATCAACCCCTACCTGCTGGGCACCATGGCGGGCGGGGCGGCCGACTGCAGCTTCTGGGAGCGTCTGCTGGCGCGGCAGTGTCGCATCTACCAGCTCCGCAACAAGGAGCGCATCTCTGTGGCGGCCGCCTCCAAGCTGCTGGCCAACATGGTGTACCAGTACAAGGGCATGGGCCTGTCCATGGGCACGATGGTGTGCGGCTGGGACAAGAGGGGGccagggctgtACTACGTGGACTCGGAGGGCAACCGCGTGTGCGGGGACTGCTTCGCCGTGGGCTCAGGCTCCATGTATGCGTACGGCGTGCTGGACCGGGGGCTGCGGCCCGACCTGAGCGTGGAGGAGGCCTGCGAGCTGGGCCGGCGTGCCATCTACCAGGCCACCTACCGCGACGCCTACAGCGGTGGCACCGTCAACCTGTACCGGGTGCACAGCGAGGGCTGGGAGCGGGTGTCCCAGGACGACGTGCTCACCCTGCACCACACCTACAGAGACAAGGAGTAG

Function

GO: NA

KEGG:

id description
K02737 PSMB5; 20S proteasome subunit beta 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167039 lncRNA downstream 137095 6079846 ~ 6080079 (-) True G133209
TU167010 lncRNA downstream 178462 6036027 ~ 6038712 (-) True AMCG00011867
TU167009 lncRNA downstream 181276 5992314 ~ 6035898 (-) True G133181
TU167094 lncRNA upstream 2726 6225520 ~ 6227193 (-) True AMCG00011886
TU167115 lncRNA upstream 8364 6231158 ~ 6231847 (-) True AMCG00011882
TU167137 lncRNA upstream 48393 6271187 ~ 6330227 (-) False G133277
TU167131 lncRNA upstream 83553 6306347 ~ 6347713 (-) True G133277
TU167150 lncRNA upstream 133671 6356465 ~ 6360880 (-) True G133286
AMCG00011883 mRNA downstream 9272 6194277 ~ 6207902 (-) True AMCG00011883
AMCG00011888 mRNA downstream 24561 6170770 ~ 6192613 (-) True AMCG00011888
AMCG00011879 mRNA downstream 60376 6156113 ~ 6156798 (-) True AMCG00011879
AMCG00011881 mRNA downstream 72684 6140151 ~ 6144490 (-) True AMCG00011881
AMCG00011887 mRNA downstream 79413 6126597 ~ 6137761 (-) True AMCG00011887
AMCG00011886 mRNA upstream 3002 6225796 ~ 6226929 (-) False AMCG00011886
AMCG00011882 mRNA upstream 8910 6231704 ~ 6233113 (-) False AMCG00011882
AMCG00011880 mRNA upstream 13950 6236744 ~ 6238926 (-) True AMCG00011880
AMCG00011884 mRNA upstream 30021 6252815 ~ 6254840 (-) False AMCG00011884
AMCG00011878 mRNA upstream 48408 6271202 ~ 6272996 (-) True AMCG00011878
TU167038 other downstream 137807 6078370 ~ 6079367 (-) True G133208
TU167012 other downstream 224156 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 259249 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 364584 5851880 ~ 5852590 (-) True G133075
TU166826 other downstream 458314 5743359 ~ 5758860 (-) True G133032
TU167095 other upstream 2726 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 29152 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 138597 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 155304 6378098 ~ 6461788 (-) False G133365
TU167270 other upstream 162862 6385656 ~ 6461788 (-) False G133365

Expression Profile