RNA id: AMCG00011881


Basic Information

Item Value
RNA id AMCG00011881
length 1182
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00011881
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6140151 ~ 6144490 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctctctctctctctctctctctctctctctccagtggaCAGCGGTGATCTCCAGTCATTGTCCAGGTCTCTGGATGCTCACAGCCTACTGTCCCAGAGAGAGAATAACCCCACCCCCACTGCAGCACAGCCCCTCCGTCCCCCGAGTCTCTGTCTGAGAGGAGCAGGAGAGAGCAGCCTGGTGGACCCATCTGAAGCCCCCAGGAGCAGCGAGGAGACGCAGAGAGCAGAGCAGACGAGCACCAGCCAGCTAACACTGACCATGAATAACTCAAAAACCACAGAACAGGACACATACGTTGACAATGAATACTACACTAGAATTACAATGATCACTGTTTTTGCAATTGacatttttgttgtggttgttgggCTTCCCGCCATCTGCCTGGCCATCTGCCGCCTGTACCGCATGATCAGGGCTGACATGTTGGTGCCCATCTACATCATCAATCTGCTCATTGCCAACCTCCTGCGGATCAGTGTGAGAGTATCCTGGTTTATCGTTCCAATACTTCCAGATGTTGAGAGATTAGATATTGTTGTGCCTATTTTGGACAGTCTCTTTATCTTCGGCCACACTGCTAGCATTGGGTTCATGATGTGCATTGCCCTGGAGAGATACCTGGTGTATCACCGCAGTGTCAGGCACACTGCACTGGTCTCTGTGGCAGTGTGGGTGTCAGTTGTGATACTCACTGCAGTGATGATTGTactatattttattctttaccTTCACATGCAAATAACTATAGCTTTCTCTGTGATCTGCCTCCTGCCATTCCCTCttctcttgttcttcttcttcggCACATGGAAAGCCATCGCCGGCGCCACCTCTGTAAGAGACGCAGAGAAGAGGAGGATTGTGCGCATGCTGGCCCTCATCCTGGGCACCTACACTGTGCTCTTCCTCCCATTCTGCATAGTGAATTTCATTAAGAGctatacaataaatacaaatattaacattGCCTTTATCATTACAATTGAAATGGTGAATCTCAGTGTCCTTGTAAACCCAGTGCTGTACATCCTCCTCAGGCCTGATGTCAGGAACACACTGGGCTCTCGCCCCTGCTGTCAGAGGCTGTTCACACTgaccaactgctggacacccaGAGCTGAGCAGGAGACAGAGGATACAGACACTGTGTCTCCTACTGAAACTAGCGTC

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167039 lncRNA downstream 60072 6079846 ~ 6080079 (-) True G133209
TU167010 lncRNA downstream 101439 6036027 ~ 6038712 (-) True AMCG00011867
TU167009 lncRNA downstream 104253 5992314 ~ 6035898 (-) True G133181
TU167094 lncRNA upstream 81030 6225520 ~ 6227193 (-) True AMCG00011886
TU167115 lncRNA upstream 86668 6231158 ~ 6231847 (-) True AMCG00011882
TU167137 lncRNA upstream 126697 6271187 ~ 6330227 (-) False G133277
TU167131 lncRNA upstream 161857 6306347 ~ 6347713 (-) True G133277
TU167150 lncRNA upstream 211975 6356465 ~ 6360880 (-) True G133286
AMCG00011887 mRNA downstream 2390 6126597 ~ 6137761 (-) True AMCG00011887
AMCG00011885 mRNA downstream 16942 6113574 ~ 6123209 (-) True AMCG00011885
AMCG00011869 mRNA downstream 63093 6068148 ~ 6077058 (-) True AMCG00011869
AMCG00011870 mRNA downstream 76672 6057493 ~ 6063479 (-) True AMCG00011870
AMCG00011871 mRNA downstream 82711 6054084 ~ 6057440 (-) True AMCG00011871
AMCG00011879 mRNA upstream 11623 6156113 ~ 6156798 (-) True AMCG00011879
AMCG00011888 mRNA upstream 26280 6170770 ~ 6192613 (-) True AMCG00011888
AMCG00011883 mRNA upstream 49787 6194277 ~ 6207902 (-) True AMCG00011883
AMCG00011877 mRNA upstream 72684 6217174 ~ 6222794 (-) True AMCG00011877
AMCG00011886 mRNA upstream 81306 6225796 ~ 6226929 (-) False AMCG00011886
TU167038 other downstream 60784 6078370 ~ 6079367 (-) True G133208
TU167012 other downstream 147133 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 182226 5955287 ~ 5957925 (-) True AMCG00011860
TU166874 other downstream 287561 5851880 ~ 5852590 (-) True G133075
TU166826 other downstream 381291 5743359 ~ 5758860 (-) True G133032
TU167095 other upstream 81030 6225520 ~ 6227193 (-) False AMCG00011886
TU167121 other upstream 107456 6251946 ~ 6254695 (-) True AMCG00011884
TU167158 other upstream 216901 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 233608 6378098 ~ 6461788 (-) False G133365
TU167270 other upstream 241166 6385656 ~ 6461788 (-) False G133365

Expression Profile