RNA id: AMCG00011894


Basic Information

Item Value
RNA id AMCG00011894
length 852
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00011894
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6316786 ~ 6322728 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGACCGGTATCATCTTACAGACCAGAGCAGACAAGGTAACTCAGGGGACTCAGGGGACTTTCCAGCCCCTTCACTGGCGCAGTTTCATGGCAATTCTGGTTTCATCCCAGTGCCAGACGCGGGCAGGAGAGAGGCTCTGAGTCTCCAGGACCTCTTTATACAGGTGAAGATGTtgatgtcagtgctgtgtgtgttggctgTGCTGGCGATCGGCCCCGGCCAGAGCCAGCCCTGCGTCAACCGAGTACCTATAGgtcaatacaatacattcatcGACAGGCACGTACTGGACTTTCCcaggaacacaaacaaacaggaatgGAAACGCTTCTTAGTTTCCAGACGACTCTGTGGCCGATTCCCAACCCAGACCTTCATTGCCTCGTCTCGGGAGGACGTCAACAACGTTTGCaggggaggaggaaggagatACTCGGAGAACACCAATGAGAACCTGTGTGTGAGCACTAAGATGTTCCCAGTGTACACCGTACGGAGCAGCAACAGGCTCAATGTGTGTCTTGTCACCAGTGTCAATCATATCCAGAGCTACATCACACTGGGCTGCGACAACATTGACAACCACTGCCGGCCCGACCACTTGCAGAGCACCACCAACCAGCCCAACCCGGCGAACCCACCCTGCCAGTGATTCAGCAATAATGATCGATGATTTCCTGTGAGATCTTATGCTTAAAACTGTATCTGTGGTTTTAACTATCTCTGCCTTTACGCTGTGTGTCAGTTTCCTGAGAACTGCATCTCTCACTCTGACAACCCCCCGCTGTCTGTGTCCTGCGTcacaaaaagtataaaaaatatataaaataaagtattttgcaGAGCA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167115 lncRNA downstream 84939 6231158 ~ 6231847 (-) True AMCG00011882
TU167094 lncRNA downstream 89593 6225520 ~ 6227193 (-) True AMCG00011886
TU167039 lncRNA downstream 236707 6079846 ~ 6080079 (-) True G133209
TU167010 lncRNA downstream 278074 6036027 ~ 6038712 (-) True AMCG00011867
TU167022 lncRNA downstream 299835 6015910 ~ 6016951 (-) True AMCG00011868
TU167150 lncRNA upstream 33737 6356465 ~ 6360880 (-) True G133286
TU167251 lncRNA upstream 51104 6373832 ~ 6374995 (-) False AMCG00011895
TU167304 lncRNA upstream 142542 6465270 ~ 6479835 (-) False AMCG00011913
TU167303 lncRNA upstream 155545 6478273 ~ 6479835 (-) False AMCG00011913
TU167315 lncRNA upstream 213895 6536623 ~ 6537760 (-) False AMCG00011913
AMCG00011878 mRNA downstream 43790 6271202 ~ 6272996 (-) True AMCG00011878
AMCG00011884 mRNA downstream 61946 6252815 ~ 6254840 (-) False AMCG00011884
AMCG00011880 mRNA downstream 77860 6236744 ~ 6238926 (-) True AMCG00011880
AMCG00011882 mRNA downstream 83673 6231704 ~ 6233113 (-) False AMCG00011882
AMCG00011886 mRNA downstream 89857 6225796 ~ 6226929 (-) False AMCG00011886
AMCG00011895 mRNA upstream 49772 6372500 ~ 6378472 (-) True AMCG00011895
AMCG00011900 mRNA upstream 64796 6387524 ~ 6393414 (-) True AMCG00011900
AMCG00011903 mRNA upstream 72284 6395012 ~ 6403156 (-) True AMCG00011903
AMCG00011904 mRNA upstream 108029 6430757 ~ 6435298 (-) True AMCG00011904
AMCG00011901 mRNA upstream 114972 6437700 ~ 6446839 (-) True AMCG00011901
TU167121 other downstream 62091 6251946 ~ 6254695 (-) True AMCG00011884
TU167095 other downstream 89593 6225520 ~ 6227193 (-) False AMCG00011886
TU167038 other downstream 237419 6078370 ~ 6079367 (-) True G133208
TU167012 other downstream 323768 5992414 ~ 5993018 (-) True G133183
TU166988 other downstream 358861 5955287 ~ 5957925 (-) True AMCG00011860
TU167158 other upstream 38663 6361391 ~ 6363728 (-) True G133291
TU167269 other upstream 55370 6378098 ~ 6461788 (-) False G133365
TU167270 other upstream 62928 6385656 ~ 6461788 (-) False G133365
TU167254 other upstream 72288 6395016 ~ 6397975 (-) False AMCG00011903
TU167255 other upstream 72288 6395016 ~ 6397975 (-) False AMCG00011903

Expression Profile