RNA id: AMCG00011897


Basic Information

Item Value
RNA id AMCG00011897
length 2622
RNA type mRNA
GC content 0.66
exon number 8
gene id AMCG00011897
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6473151 ~ 6478205 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGTCAGAGTTCACGGGCCGGGCAGCCATGGAGCGGCTGGGCTGCCGGCTGCTGGAGAAGCTGCGTCTGTCGGACTCCAGCGGTGCCAGGCTGGGCGGCTCACGGCGGAAGAGCGAGGGCAGCGGCACCAGCAGCAGGAGGGCGCGGGGCGGGGTGGGCTCGGGCCCCTCCCTGGCTGCCACCACACTGAGCGGCAACCACTCCCCGCCGCCCAGCCTGGCAACGCCCACCCCCGTCCTGGTGCCGCCCAGCGACCGGGGCAGCAGGGGGGGAGCGGACAGCTACCGGGACAGCGGCTCCTACTGCAGCCTAGCCGGGCCGGACTGTTGCCGGGTGGGGGACGGCGGCTCCCACAACAGCTGGGCCGGGCTGGACGGGCCCTGCGGCGGCTACAGCGGCGCCTACAGAGGGGGCAGCGGCAGCTCCCACAACAGCACGGGGCCCGAGGGCTACGGCAGCACCTACAGAGGGGGGGACGGCGGTTCccacaacagcagcagccccaGCGGGGGGGGAGGTGGCGGGTGTTACGGCGGCCGGGGGGGGGCAGGTCAGCGGCGCTACTCCCTGGAGAtgcagcagctcctcctgcGACACCAGCATCTCCTGcagccgcccccccacccccacgccGGCGCCAACGCCCAGCCGACGCACCAACATGCCAACGCACTGCCGACGCACCCCCACCGGCACAGCGCAGCCGAGCCGGGGCAGCCCCCTCCCCGGGAGAGGCCCAAGCGCTACTCCCTGCAGGAGCCGCCGCACCCCCTGCCGCCCCCACACCCCCGGGCCCAGCGCCACAGCGACGGCCTGGCGGCGTGCTCCCCCCTGGCCAGCCCCCGGTCCTCCTGCTGCAGCGCGGGGGGGGGCAGCCCGGACAGCGGCTGCAGCAGCAACCGGACCAGCGGCATCAGCCTGGGGTACGATCTGCGGCTCGGACCGCCCCCCGCCCCGCCCGGACCCCCCAGCGCCCCTGACCCAGCCGTCGTCTACGCCCTGCTGGGAGGGCTGTGGGAAgggggcagggcagggggaGGGCAGGACGTCAGACACTCCTACCCACCCGCCCTGCTGGCCGAGGGGGCCGGCGGGGGGCCGTGGGGGCAGGAGagtgggggaggagagagagaaggaagaggaggagaggaggacgGAAGAGgtggaggggaggagggagggctGGGCGGCGCCACTCAGGACAACAGACACTCCTATCCGCCCAGCCTGGGCCCCGGCTCTCTGTTGGGGGGCCCCAGGGGTGGCCCCGGGGTGTGGTACCAGGAGGTGCTGTGTGCTCTGCTAGGGAGGGATGCCATAATCAGCAACAGCAGCGGTAACGCGAGCCGCCACACGGCCACCGACTCGCCAAGCTTCGCTGGCGCCGCCCCCGCGCATCACCACGCAGACAGAGACCCCGCTGCCCCCCGGCCCGAGGAGCCCCCGGCCCCCCGCAGAGACCCCAGCCTCGCTGAGAGACAGGAGTACTATGGTGCGTGTGTGAAGTGCAGTAAGGGAGTGTACGGAGCCGACAATGCGTGTCAGGCGCTGGACAGCCTGTATCACACACACTGCTTCACATGTGTGTCCTGCGGTCGCACTCTCAGAAACAGGGATTTCTTCCACGCCAACGGCTCAGTGTACTGCAAAGAGGATTACATGTTCTCAGGGTTCCAGGATGCTGCGGagaagtgcagtgtgtgtggacaCCTGATTCTGGAGAAGATTGTCCAGGCTCTGGGCAACTCCTACCACCCCAGCTGTTTCCGCTGCGTGGTGTGCAGCCGGCCGCTGGACGGAGTGTACTTCACTGTGGACTACCGCAACAAAGTCTACTGCGTCCCCGACTACCACAGGACCTTCGCTCCCAAGTGCGCAGCCTGCCTGCAGCCCATCCTGCCCGCggagGGCAGCGACGAGATTCTCAGGGTTGTGTCCATGAACAGAGACTATCACTTTGAGTGCTACCACTGTGAgGACTGTGGTCTGCAGCTGTCAGACCAGCCGGGCTCTCAGTGTTTCCCGCTGGACTCCCACCTTCTCTGTCATTCCTGTCACATGACCAGGGTGTGTCCCGCCCTGCTGCGGACCCCACACAGCACACATTGAGAACCAGTCCCTCCTGGACGCAGAAACGGCAGGAGAGGAGactgctgaaaaaaacaactcgAAATTGCCCCGGAAACAAACTCGTGCAGCACCCAAACATTCCCCCCGGGGCAACAACTGAGATGACAAAGGTTCCTGCTGTTACACACTTAAAATACTGCCTGCACATCACAGCACAGGGTAGCGCAGCACTGAATACATTCCCCACAGAAATCGCCAAGAAAGGCGGCGCGGCACAAGAATCATTACCGTCTTCATGGTTCCGCATTCAACGCAGTACATCTTTGTAGAGCGTTTGCCTCCAGCCGTGAGGGGCGTCAGAGCAGCGCACCCACGCTATTTAAAACGACACCCTTCACGAGATCAGGGCTCGGTTTCTCATCGCTGGAGGGGTTGTTTTGCACTTAAATGACTGCTGCTCCGCTGCAAGTTcgtgttttttgcatttgtttttcctgccaAGACTGACATTCCTGCTGTCTATGactgtgtaataaatatttaagttgC

Function

GO: NA

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 125445 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 212783 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 248632 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 372132 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 395766 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 88654 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 111211 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 170505 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 198311 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 236153 6714358 ~ 6717923 (+) True G133440
AMCG00011898 mRNA upstream 12442 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011899 mRNA upstream 48001 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011896 mRNA upstream 64621 6406462 ~ 6408530 (+) True AMCG00011896
AMCG00011905 mRNA upstream 68673 6402981 ~ 6404478 (+) True AMCG00011905
AMCG00011889 mRNA upstream 99971 6371242 ~ 6373180 (+) True AMCG00011889
AMCG00011906 mRNA downstream 24604 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011908 mRNA downstream 48654 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011909 mRNA downstream 79982 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011910 mRNA downstream 83894 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011907 mRNA downstream 88962 6567167 ~ 6568025 (+) True AMCG00011907
TU167105 other upstream 216469 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 585259 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 585259 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 643619 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 711903 5759858 ~ 5761248 (+) True AMCG00011830
TU167207 other downstream 5742 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 67183 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 758736 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1026877 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1086603 7564808 ~ 7566028 (+) False AMCG00011971

Expression Profile