RNA id: AMCG00011898


Basic Information

Item Value
RNA id AMCG00011898
length 2005
RNA type mRNA
GC content 0.62
exon number 11
gene id AMCG00011898
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6449205 ~ 6460709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCGGCGCCACGCGGAGGTGACCCGGCTGCTGTGGCTCGCGGCGGCGCTGGCGGCGGTGGACGGGGCGGCGGGCAGCGATGCGGTCAAGCCGGAGgcTTGGCTGCAGCAGTATGGGTACCTGCCCCCCGGTGACCTGCGCACTCACATGGTGCGTTCCCCCCACTCCGTGTCCTCGGCCATTGCCGCCATGCAGCGCTTCTACAACCTGACAGTGACTGGTGAGGTGGATGACAACACCATAAAGGCGATGAAGCGGCCTCGCTGTGGCGTCCCAGACAAGTTCGGCTCAGAGCTGAAGAGCAACCTGAGGAGGAAACGCTTTGCTATCCAAGGGCTGAAGTGGGACAAGACTGAAATCACATTCAGTATAGTGAACTACACTCCCAAAGTGGGAGAGTACGAGACGCACGAGGCGATCCGCCAGGCGTTCGCGGTGTGGCAGGGCGTCACTCCGCTGCGCTTCCGCGAGGTGCCCTACCACTACATCCGTGACAAGACTGAGAAATACGCCGACATCATGCTGCTCTTCGCCGAAGGATTCCATGAAGACAGCAGCCCCTTCGACGGCGAGGGCGGCTTCCTGGCGCACGCGTACTTCCCCGGCCCGGGCATAGGGGGCGACACACACTTCGACCTGGCCGAGCCCTGGACCGTCCGCAGAGACGACCTGTATGGTAATGACGTGTTCCTGGTGGCGGTGCACGAGCTGGGCCACGCCCTGGGGCTGGAGCACTCGTCCGACCCCTCCGCCATCATGGCCCCCTTCTACCAGTGGATGGACAAGGAGAACTTTGTCCTGCCCGAGGACGATCGTCGGGGCATACAGCAGCTCTACGGATCAAAGGGCCATGTTCCTCCCAGAGTTCCAGTGACCCCTCGTCCTCCCAAGGTCACGCCCCGCCCCCCCAAGACCCCGGGGACTCCTGGGAAGCCGCACGGTCCTCCCTACGGCCCCGACATCTGCGAGGGACACTACGACACCATCGCCATACTGAGGGGGGAGATGTTTGTCTTCAAGgacAAGTGGTTCTGGCGGGTGCGGGATGGCCGGGTGATGGATGGCTACCCACTCCCCATCGGTCACTTCTGGCGCGGCCTGCCCGCCTCCATCAACGCAGCCTATGAGCGCCACGATGGCAACTTCGTCTTCTTCAAGGGTGACAGGCACTGGGTGTTCAGTGAGGCCAGCCTGCAGCCCGGATACCCCAAGAGCCTGCGGGAGATGGGAAAGGGGCTTCCCAAAGACCGGCTCGACGCCGCCCTCTACTGGATGCCCAACGGGAAGACATACTTCTTCAGAGGGAACaaCGAATACCCCAAGCCCATCAGTGTGTGGGAGGGCGTCCCAGAATCGCCACGCGCCGCCTTCATGAGCAAGGATGGAGcCTTCACCTATTTCTACAAGGCGAATCGCTACTGGAAGTTCAACAACCAGCAGCTGAAGGTGGAGCCCGGCTACCCCAAGTCTGTGCTGAGGGACTGGATGGGCTGCGCTGGGGAGGGCGAGCCCGAGGACCCCCGGCGCGGAGGGGGAGGAGGTGAAGGAGGCGGAGGAGACACCGATGTCATCATCATCGAGGTGGACGAGGCCGGGGGCGGGCCGGGGGTGGCGGCCGTGGTCATCCCAGTGCTGCTGTTCCTGTGCGTGATCCTGGCCCTGGGGGCCGTGCTGTTCTTCCGCCGCTATGGCACCCCCCGCCGCCTGCTGTACTGCCAGAGGTCACTGCTGGACAAGGTCTAatagacagaaagagagaaaaaaggagagagactatcaggtctatatatatatatgttatgtcTATCCACACACTATCAgatactcactcacacacacacgcacgcacgcggCACAGGCAGGCACcagcgagagggagggagagagagaagcactcGGAAAAGTAAACGACCCTCTGGTaccctctctccccttcctcctcctccctctctccctctctctctctctctctctctctctctctccccgtcgaTCTCCCTCC

Function

GO: NA

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 101499 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 188837 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 224686 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 348186 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 371820 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 106150 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 128707 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 188001 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 215807 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 253649 6714358 ~ 6717923 (+) True G133440
AMCG00011899 mRNA upstream 24055 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011896 mRNA upstream 40675 6406462 ~ 6408530 (+) True AMCG00011896
AMCG00011905 mRNA upstream 44727 6402981 ~ 6404478 (+) True AMCG00011905
AMCG00011889 mRNA upstream 76025 6371242 ~ 6373180 (+) True AMCG00011889
AMCG00011893 mRNA upstream 80894 6364173 ~ 6368311 (+) True AMCG00011893
AMCG00011897 mRNA downstream 12442 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011906 mRNA downstream 42100 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011908 mRNA downstream 66150 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011909 mRNA downstream 97478 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011910 mRNA downstream 101390 6562099 ~ 6563815 (+) True AMCG00011910
TU167105 other upstream 192523 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 561313 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 561313 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 619673 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 687957 5759858 ~ 5761248 (+) True AMCG00011830
TU167207 other downstream 23238 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 84679 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 776232 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1044373 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1104099 7564808 ~ 7566028 (+) False AMCG00011971

Expression Profile