RNA id: AMCG00011899


Basic Information

Item Value
RNA id AMCG00011899
length 896
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00011899
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6421133 ~ 6425150 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaatcccacaatgcaccgccGCGCCTACAACGGAAGTTCCCCAGTGAAATTGGCGGGGTTCTCCACCGAGGTATCGCGATTACCGAGTGCGCACGGTTTCAACTTTTAACGCGTTTTCATTAGATTTGTGTATGATAAATGATAAGTGTATCCATCAGTTACCCACTAGTATTAGTATagtagtatttttgtatttctccacCAGCTAATTGCTGCTAAACATCTGCATTTCGTGGCGCTGGAAACATGCCGAACAGCAGACACCTTTACCAGCGGGACAGGGACCTCTTCCCCCCGGCCAGGCGAATCAATTCAGCCGTCTGGGCGTATTTCGGATATGTGAAAAACGACCAGGGCACCGTTGTTGAGGACGGGAAACCAGTCTGCAAATTGTGCAGGATCCAGGTGTCGGCTATAAGTGGGAACACGTCCAACATGTTCGCCCACCTCCGAGTCCATCACCCGTCCCACCACAAAAAAGCCCTGCAGACAAAGGATGCGCTGGACCCAAGACGACACACCGCCCAGCATACCCAGCCCGTCAGACCGAGCCTACGAGTCATAAAGACGGAGCCGTGCAgtgaggaggaggcagaggggctGTCAGAGCCCAAGAGACCCTGCAGCAGAGACATCCATACCAGCTTGATCTCTTGTCGCTGCGGGAGGCTGCAGCAAGCAGAGGAGAGACACAAGAGCGAAGTGAGAGAGTTACAGCAGAAGATTGCAAGAATGCAGGAACTGGATCAACTCATGAACGAGGAGAAGCAGGAGATTCAGAATCATTTCCAGCAGAAACTGGAAGCGgcaagagaggaggcagagagcaGCACTGTACTGGGGGGACTGCTCACTATGGTGAGGGAGGTTTTCTCTCAGTTTTGGGGGAGATAG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 73427 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 160765 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 196614 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 320114 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 343748 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 141709 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 164266 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 223560 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 251366 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 289208 6714358 ~ 6717923 (+) True G133440
AMCG00011896 mRNA upstream 12603 6406462 ~ 6408530 (+) True AMCG00011896
AMCG00011905 mRNA upstream 16655 6402981 ~ 6404478 (+) True AMCG00011905
AMCG00011889 mRNA upstream 47953 6371242 ~ 6373180 (+) True AMCG00011889
AMCG00011893 mRNA upstream 52822 6364173 ~ 6368311 (+) True AMCG00011893
AMCG00011892 mRNA upstream 60253 6351594 ~ 6360880 (+) True AMCG00011892
AMCG00011898 mRNA downstream 24055 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011897 mRNA downstream 48001 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011906 mRNA downstream 77659 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011908 mRNA downstream 101709 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011909 mRNA downstream 133037 6558187 ~ 6560662 (+) True AMCG00011909
TU167105 other upstream 164451 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 533241 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 533241 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 591601 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 659885 5759858 ~ 5761248 (+) True AMCG00011830
TU167207 other downstream 58797 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 120238 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 811791 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1079932 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1139658 7564808 ~ 7566028 (+) False AMCG00011971

Expression Profile