RNA id: AMCG00011902


Basic Information

Item Value
RNA id AMCG00011902
length 396
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00011902
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6468089 ~ 6471733 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCCTTCTCTGGGCCTGTGGACAGTGGACAGTGGACAGCTCTGCTACGCAACGATCCGTACCGTCCTCGGCGTCCGCGTCCAAGATGGCGGCGCCCGTGAAGACGCTGTTGAGAGCAGGCATGGCTTTGCCCGCAGCAGCACCGAGTACGGCCCGCTGACCGACCTCCCCGATTGGTCATTCGCCGGacagagcaggaggaggagtgAGCGGGAGGAGCTGGCGcgCCGTGTTGTCGTTCTGAGCTCTGAGATGGACCGCGGGATGGAGAGATGGGATCAGAAGCAGGTGGAGACGCGGCAGCGTGCAGCGAAGACACAGTCCCTCCTTCTCAAACCCAAAGGCAaactgctgctgaaaaacaagaaataaagactttaaaaacagaaacaa

Function

GO:

id name namespace
GO:1901576 organic substance biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005739 mitochondrion cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167251 lncRNA downstream 93094 6373832 ~ 6374995 (-) False AMCG00011895
TU167150 lncRNA downstream 107209 6356465 ~ 6360880 (-) True G133286
TU167131 lncRNA downstream 120376 6306347 ~ 6347713 (-) True G133277
TU167137 lncRNA downstream 137862 6271187 ~ 6330227 (-) False G133277
TU167115 lncRNA downstream 236242 6231158 ~ 6231847 (-) True AMCG00011882
TU167303 lncRNA upstream 6540 6478273 ~ 6479835 (-) False AMCG00011913
TU167315 lncRNA upstream 64890 6536623 ~ 6537760 (-) False AMCG00011913
TU167327 lncRNA upstream 71469 6543202 ~ 6545755 (-) False AMCG00011916
TU167344 lncRNA upstream 143469 6615202 ~ 6617207 (-) False AMCG00011920
TU167345 lncRNA upstream 143469 6615202 ~ 6617207 (-) True AMCG00011920
AMCG00011901 mRNA downstream 21250 6437700 ~ 6446839 (-) True AMCG00011901
AMCG00011904 mRNA downstream 32791 6430757 ~ 6435298 (-) True AMCG00011904
AMCG00011903 mRNA downstream 64933 6395012 ~ 6403156 (-) True AMCG00011903
AMCG00011900 mRNA downstream 74675 6387524 ~ 6393414 (-) True AMCG00011900
AMCG00011895 mRNA downstream 89617 6372500 ~ 6378472 (-) True AMCG00011895
AMCG00011913 mRNA upstream 7986 6479719 ~ 6501567 (-) False AMCG00011913
AMCG00011915 mRNA upstream 34246 6505979 ~ 6509786 (-) True AMCG00011915
AMCG00011912 mRNA upstream 61059 6532792 ~ 6535027 (-) True AMCG00011912
AMCG00011916 mRNA upstream 68228 6539961 ~ 6545158 (-) True AMCG00011916
AMCG00011911 mRNA upstream 77629 6549362 ~ 6551469 (-) True AMCG00011911
TU167269 other downstream 6301 6378098 ~ 6461788 (-) False G133365
TU167270 other downstream 6301 6385656 ~ 6461788 (-) False G133365
TU167262 other downstream 6301 6402069 ~ 6461788 (-) True G133365
TU167254 other downstream 70114 6395016 ~ 6397975 (-) False AMCG00011903
TU167255 other downstream 70114 6395016 ~ 6397975 (-) False AMCG00011903
TU167311 other upstream 8353 6480086 ~ 6481834 (-) False AMCG00011913
TU167316 other upstream 8353 6480086 ~ 6491966 (-) True AMCG00011913
TU167319 other upstream 58964 6530697 ~ 6548895 (-) True G133393
TU167424 other upstream 191399 6663132 ~ 6740536 (-) True AMCG00011924
TU167457 other upstream 296560 6768293 ~ 6770294 (-) False AMCG00011928

Expression Profile